Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07569 ATGGCTGGGATTGATGATAATGTTGCTCTTACTGGTGATTGGGGTCTTGCTAGCCCTAGTCCAAGGACCTTTTTTTCTAGAATGCTAGATGGAGATAATTTAACAAGATCAATCTCAGAACAACCTGGAAGTGGTAGAACTGAGGATCTCTTTCTGGGAACTCATGAGCCCTGTGAGACAGGGAAAGGAAACATAAAAGATAGGGCACAAGATGGTGATTCTGGTGCCCAATTGACTGACATGAGTTTTCAAATGGAGCAGAAGTCGAGCTCACGGGGTGGTCTTGTTGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCAAGGTTGAATACAGAAGGCATTAGATCTACTGACCTTTCACTTAATTCTGACATTCAGTCTCCTTACTTGACTATACCACCTGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCTCAGCCATCCCCAACAACAGGGAAGTTTCCATTTGTCTCAAATGGCAACATCCGGTGCTCAGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAACAGCTTTGATGATATCTATGCATCATCCTTTGCTTTCAAGCCTACAACAGATCCAGCCTCTTCTTTTTATCATGGTGCTGGAACAAAAATAAATCCGACTGCACTTCATCAACAATCCCTACCAGCAGTTCAGTCACAAAATTCCTTTCAATCTCAGAGTGTCAATGCAGTCAAAGCTCAAACTGAGAATAAGAGTGGCCTCCATCTTCAAGCAGACTTCATCCAATCACAACCTCAAAAAGATAATGGAATTAAAATGTTCTCAGCTGATCAAAGGGCTTTTGATGCTGTTGGCGGTAACATTGAACATTCTACACCACCTGAAGAGCAAGCAGATGAAGAGGGAGATCAAAGAGGCAACGGAGACTCAATGGCTGCTGGTGCTGGTGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGTGAGTATCCACGAAGTTACTACAAGTGTACACATCCAAATTGTCAGGTTAAGAAGAAAGTAGAACGTTCTCATGAGGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCATCCGAAACCTCCTCCAAATCGCCGGTCAGGCATAGGGTCAGTTAACCTTCATACTGACATACAAGTGGACAATCCTGAACATGTTGAACCACAGAATGGTGGTGACAATGACCTGGGATGGGCTAATGTACAAAAGGGAAATATAGCTGGTACTGCTAACTGGAAGCATGACAACCTTGAAGTGACATCATCAGCATCTGTCGGCCCTGAGTACTGCAACCAGTCCACCAATTTGCAGACACAAAATAGTACTCACTTTGATTCAGGAGATGCAGTGGATGCCTCATCTACTTTTTCTAATGAAGAAGATGAAGATGATCAAGGAACTCATGGTAGTGTATCCTTAGGTTATGATGGTGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCAACAGAGTTGAGTGGAGCTACGAGAGCTATTCGTGAGCCTAGAGTTGTTGTACAGACTACCAGTGAAGTAGATATCCTGGATGATGGTTATCGGTGGCGGAAATATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACAGTAAGGAAGCATGTTGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATATGAGGGAAAGCACAACCATGATGTTCCCGCTGCTCGTGCTAGCAGTCACGTGAATGCAAACGCTTCAAACACTGTTCCTGGGCAAGCTTCTGGTGTTCTTCAAACCCATGTTCATAGACCTGAACCATCTCAAGTTCACAATGGCATTGGAAGGCTTGAGAGGCCATCCCTTGGCTCATTCAGCCTTCCTGGGAGGCAGCAGTTAGGTCCTTCCCATGGCTTCTCCTTTGGTATGAATCAACCAATGCTCTCAAACCTGGCAATGTCTGGATTGGGCCCCGCGCAAGCGAAGCTTCCTGTCATGCCTGTTCATCCATTCTTGGCACAACAACGCCCAGCAAATGAAATGGGATTCATGTTGCCAAAGGGAGAACCAAATGTGGAGCCTATTCCTGAACGTGGCCTTAACCTGCCTAGTGGCTCATCAGTATATCAAGATATTATGAGTCGCATGCCTCTTGGACCTCATATGTAA 2238 0.4441 MAGIDDNVALTGDWGLASPSPRTFFSRMLDGDNLTRSISEQPGSGRTEDLFLGTHEPCETGKGNIKDRAQDGDSGAQLTDMSFQMEQKSSSRGGLVERMAARAGFNAPRLNTEGIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNIRCSELSSDAPEKCKDNSFDDIYASSFAFKPTTDPASSFYHGAGTKINPTALHQQSLPAVQSQNSFQSQSVNAVKAQTENKSGLHLQADFIQSQPQKDNGIKMFSADQRAFDAVGGNIEHSTPPEEQADEEGDQRGNGDSMAAGAGGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPPPNRRSGIGSVNLHTDIQVDNPEHVEPQNGGDNDLGWANVQKGNIAGTANWKHDNLEVTSSASVGPEYCNQSTNLQTQNSTHFDSGDAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNTVPGQASGVLQTHVHRPEPSQVHNGIGRLERPSLGSFSLPGRQQLGPSHGFSFGMNQPMLSNLAMSGLGPAQAKLPVMPVHPFLAQQRPANEMGFMLPKGEPNVEPIPERGLNLPSGSSVYQDIMSRMPLGPHM. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07569 745 MobiDBLite consensus disorder prediction 496 510 - -
Seca3g07569 745 MobiDBLite consensus disorder prediction 448 472 - -
Seca3g07569 745 Pfam WRKY DNA -binding domain 321 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 Pfam WRKY DNA -binding domain 538 594 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 Gene3D WRKY domain 311 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 ProSiteProfiles WRKY domain profile. 315 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 ProSiteProfiles WRKY domain profile. 532 597 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 FunFam WRKY transcription factor 33 524 590 - -
Seca3g07569 745 MobiDBLite consensus disorder prediction 37 75 - -
Seca3g07569 745 SUPERFAMILY WRKY DNA-binding domain 529 597 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 SMART WRKY_cls 320 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 SMART WRKY_cls 537 596 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 MobiDBLite consensus disorder prediction 448 513 - -
Seca3g07569 745 FunFam WRKY transcription factor 310 380 - -
Seca3g07569 745 MobiDBLite consensus disorder prediction 52 69 - -
Seca3g07569 745 Gene3D WRKY domain 524 590 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 143 612 IPR044810 GO:0003700
Seca3g07569 745 SUPERFAMILY WRKY DNA-binding domain 319 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g07569 745 MobiDBLite consensus disorder prediction 285 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07569 Seca-Chr3 184853400 184858048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07569 1 740 WRKY Transcription Factor Family AT5G56270 50.065 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g07569 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07569 K18835 - gmx:100796545 1301.19