Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07538 ATGGATCCAAATAAAGGAAAGAAAAAGAAGCACAAGGACAAAAAGAAAAAACATTCAACTGATCAAATGCTCAATTCAAATGAAACCCTTGAAGAAAATTGTACTGGTGAAGCAGCGGACAAACAAACTTGCTCTATTGAAGGGAATATTACATTCATAAGAAATAGGGAAGAAGAGAGACACATTGATAAGAGGAAGAAGAAAAAGGGGAAGAAAGAGATTGAAGTGATGGATAGTAATGTAGGTGATGATAAAGAGGTGCAGTTCTTGGAAGATAACCAACAAATCAAGATGAAGAAAAGAAAGAAGTATGATGATTCATTAACTGAAATGCAAGAAATGGGTTTTTCACAACTGAGCAAAAAAGGCAAAATGACAAAGGAGAATGAATTAATAAACAATGAAGGTGATCCTCCTTTGGATAGAATCAGTGCGGGAAATTCTAATGCACACTCTCATGTTGCTAATGTTGATTGTGAAGGTGAGATGACAGAGAAGAAGAAAAAACTGAGCAACAAAAAAGGTGATCATTCTGCTGTCACTGAAGAGAGGCAAGGCAAGAAGATGAAGACAGAGAAGATACTGAGCAAGAAAAACAAAAGAACTGTTGATGAAGAGTATGAGACCAATGGTGGTGATCTATGTTTGGCCAAAAACAATGCAGTTGACCCACCTGTGGCCAAAAGTAATGTTGATCAACATTTGGTCAAAAGCAATGAAGGTGAAGATGATGATCGAGGCAAGAAGAAGAAGAAGAAACCGAGTGTAGAAAGCAAACATAAGGAGTATAATGAGTTCAAAAGCAATGAAGGTCAAGATGATGACCAAGGCAAGAAGAAGAAGAAAAAGAAACTGAGTGAAGGAAGCAAACATAAGGAGTATAACGAGTTCAGAAGCAATGAAGGTGAAGTTAATGACCAAGGCAAGAAGATGAAGAAGCAGAAGAAACTAATTGAAGAAAGCAAACTTAATAAATATAATGAGTTTAGAAGTGATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAGAAATTGAGTAACAAAAGTAGAAGTGATGGACCATCCAAACCCAAACGAGTAACTTTTTCTGATCATGTAGAGGTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTATACACGAGAAGAAGATGAGAAGATCAAAGCAGCTGTCTTTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAAGAAACATCCTGAAGTTAGGGATTGTTGGAAGGAAATTGGAGCAGTCTTTCCTAATAGACCTTACTTAAGTGTGTATTATCGTGCTCATATTTTGTTTGAAAGGGGTGAGAGCCGTAAGTGGACACGTGATGAGCTTGAATTTGTACGGAAGGTCCAGGAACAACATGGATCTGATTGGAAATCAGTAGCTGAAGCTTTGGATAAAAGCCGAGCTCATATAAAGGATGCATGGCGTAGAATAAAATCAGCCAATCTAAATAGAGGACGATGGACCCAAGAGGAGATTCAAAAGTTATTTGATTTAGTAAACCTGGATCTACGCGCGAGGGCTTCAGAAGGTTTTAGAAAATCTAAACATGGTATGTTGCGAGATAATATTAGTTGGGAAGCAATTGGTAGCAAATTGACCACTAGAACCAGTCCAGTGTGCTGCAAAAAGTGGTATGAGAAATTAGCATCACCTATGGTTTCTAAGGGTGAGTGGTCTGACACTGATGACTACCGCTTGGTAAATGCTTTATATGCTTTGGATGCATGCTGCATGGAGGAGGTAGACTGGGACAATCTGCTTGAGCATAGGTCTGGTGATGTATGCAGAAAACGATGGAACCAAATGGTCCAACAAATTGGAGAGCACGGAGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTTCCAAGAGATATTGCCCCCACTTATTGGAAGCGAGAGAGGACTTTGATAACAAACCTGTGGTTTGTTGA 1983 0.3913 MDPNKGKKKKHKDKKKKHSTDQMLNSNETLEENCTGEAADKQTCSIEGNITFIRNREEERHIDKRKKKKGKKEIEVMDSNVGDDKEVQFLEDNQQIKMKKRKKYDDSLTEMQEMGFSQLSKKGKMTKENELINNEGDPPLDRISAGNSNAHSHVANVDCEGEMTEKKKKLSNKKGDHSAVTEERQGKKMKTEKILSKKNKRTVDEEYETNGGDLCLAKNNAVDPPVAKSNVDQHLVKSNEGEDDDRGKKKKKKPSVESKHKEYNEFKSNEGQDDDQGKKKKKKKLSEGSKHKEYNEFRSNEGEVNDQGKKMKKQKKLIEESKLNKYNEFRSDEGEDGDQGKKMKKKLSNKSRSDGPSKPKRVTFSDHVEVCCDGLVRGKRYTREEDEKIKAAVFDYIESHGLGDEGLDMVLHCKKHPEVRDCWKEIGAVFPNRPYLSVYYRAHILFERGESRKWTRDELEFVRKVQEQHGSDWKSVAEALDKSRAHIKDAWRRIKSANLNRGRWTQEEIQKLFDLVNLDLRARASEGFRKSKHGMLRDNISWEAIGSKLTTRTSPVCCKKWYEKLASPMVSKGEWSDTDDYRLVNALYALDACCMEEVDWDNLLEHRSGDVCRKRWNQMVQQIGEHGGKPFAEQVEILSKRYCPHLLEAREDFDNKPVVC. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07538 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 452 499 IPR017930 -
Seca3g07538 660 SUPERFAMILY Homeodomain-like 545 622 IPR009057 -
Seca3g07538 660 CDD SANT 503 565 IPR001005 -
Seca3g07538 660 ProSiteProfiles Myb-like domain profile. 453 495 IPR001005 -
Seca3g07538 660 Gene3D - 455 494 - -
Seca3g07538 660 PANTHER GB|AAC33480.1 7 659 - -
Seca3g07538 660 MobiDBLite consensus disorder prediction 1 41 - -
Seca3g07538 660 ProSiteProfiles Myb-like domain profile. 567 620 IPR001005 -
Seca3g07538 660 SUPERFAMILY Homeodomain-like 451 508 IPR009057 -
Seca3g07538 660 Gene3D - 495 570 - -
Seca3g07538 660 MobiDBLite consensus disorder prediction 156 362 - -
Seca3g07538 660 ProSiteProfiles Myb-like domain profile. 496 565 IPR001005 -
Seca3g07538 660 MobiDBLite consensus disorder prediction 235 362 - -
Seca3g07538 660 MobiDBLite consensus disorder prediction 23 41 - -
Seca3g07538 660 SMART sant 571 622 IPR001005 -
Seca3g07538 660 SMART sant 450 497 IPR001005 -
Seca3g07538 660 SMART sant 377 448 IPR001005 -
Seca3g07538 660 SMART sant 500 567 IPR001005 -
Seca3g07538 660 MobiDBLite consensus disorder prediction 158 208 - -
Seca3g07538 660 Pfam Myb-like DNA-binding domain 454 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07538 Seca-Chr3 184218049 184220235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07538 454 586 MYB Transcription Factor Family AT3G09370 26.667 1.73e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g07538 Myb_DNA-bind_6 5.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07538 - - gmx:100785842 689.878