Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07536 ATGGGATGTGGTATGCAGTATGGACGATTTGAAAAATTGATAGAATTAAAATTGTCATTACTTTACCCCTTTTGTCTATGTAGGGTTCCTACTCTAGGAGGAAAGCCGCTAGATCTGTATCGCCTATTCATAGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTGATTGTAGATCGTAAATGGAAGGATGTGATTCTGGCCTTCAGGTTCCCTGATACCATAACAAGTGCATCATTTATGGTGCGCAGATACTATCTGTCGTTGCTTTATCACTTTGAGCAAGTGTATTTTTTTCGGAAGCATGTCCCTCCTTCCTCAACACCTGATAGTCCAGCACAGACACTTGGTTCTGTAGTGCATGGAACAATTGATGGGAAATTTGATTATGGATATGTAGTTACAGTTAATCTGGGTTCTGAAGAGCTAAAAGGTGTCCTGTATCATGTTCCTGATAATGTGTCCCGGAGTACTAATGCAGAAAGCACACCTAGTACGCAGAATCGAAAGAGATCAAGATTAGCATTACGTGATCCATCTCGGCCGAAATCAAACAGGAGTGGTTACAATTTCTTTTTTGCTGAGAATTATGCCAGGCTAAAGCCCTCGTTTTATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAGCAATCTGACAGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGCTGAGAGATAAGGAAAGATACAAGACTGAAATGTTGGAGTACAAATCCAATAATTCAACTCCTCAACCTCAATACACTCAACCTCAATAG 789 0.4094 MGCGMQYGRFEKLIELKLSLLYPFCLCRVPTLGGKPLDLYRLFIEVTSRGGLEKVIVDRKWKDVILAFRFPDTITSASFMVRRYYLSLLYHFEQVYFFRKHVPPSSTPDSPAQTLGSVVHGTIDGKFDYGYVVTVNLGSEELKGVLYHVPDNVSRSTNAESTPSTQNRKRSRLALRDPSRPKSNRSGYNFFFAENYARLKPSFYGQERAISKRIGFLWSNLTEAERQVYQEKGLRDKERYKTEMLEYKSNNSTPQPQYTQPQ. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07536 262 SMART ARID_2 8 93 - -
Seca3g07536 262 SUPERFAMILY ARID-like 26 106 IPR036431 GO:0003677
Seca3g07536 262 CDD HMG-box_AtHMGB9-like 181 247 - -
Seca3g07536 262 ProSiteProfiles ARID domain profile. 3 97 IPR001606 GO:0003677
Seca3g07536 262 SMART hmgende2 180 249 IPR009071 -
Seca3g07536 262 Pfam HMG (high mobility group) box 181 248 IPR009071 -
Seca3g07536 262 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 28 257 - -
Seca3g07536 262 SUPERFAMILY HMG-box 174 251 IPR036910 -
Seca3g07536 262 MobiDBLite consensus disorder prediction 153 169 - -
Seca3g07536 262 Gene3D High mobility group box domain 164 258 IPR036910 -
Seca3g07536 262 Pfam ARID/BRIGHT DNA binding domain 28 93 IPR001606 GO:0003677
Seca3g07536 262 SMART bright_3 12 98 IPR001606 GO:0003677
Seca3g07536 262 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 181 248 IPR009071 -
Seca3g07536 262 MobiDBLite consensus disorder prediction 153 182 - -
Seca3g07536 262 Gene3D - 15 107 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07536 Seca-Chr3 184141793 184145771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07536 28 253 ARID Transcription Factor Family AT3G13350 55.020 1.24e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca3g07536 HMG_box 6.6e-10 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07536 - - adu:107491521 362.073