Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07533 ATGTCGATGGTGCTGAGGAAAGTGTGGGAAATGGTGTCGGGTTGCAACAACCCATCAGGAGAAGTTGTTCGTGCGGATTTGGGTGCGTTGGAGCAACTATCCTCTGACATATTGATGCAAATTCTGAAGCTTTTGGGTCCCAAAGAAGCTGCGAAATTGAGCTTGGTTTGCAAGGCTTTGAGATTTCAGGTTTCGGATAATCGCCTTTGGCTTCACTTCCTTCAGACCCACCAGGCTGAACCCTCTTGGGATTCTGTTTTCTTTGCTGAGACCACCTTGACCTCTGGCTACCCTCTTCCATCCTTCGTCGGTCAGAGGCTCCATCTGTCATTCAAGCACATTTATGGCCAGAGAGCACAAGTTCCTGGTGCTATTATTATTGATGGCGGCTCTGGCTATTGCAAATTTGGCTGGAGCAAGTATTCTTGTCCATCAGGGCGATCAGCAACATTTTTGGAATTTGGAAACATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTATACCAATATGCCATTATGATGATACTGAATCAGCCAAAGCATCAAGACGACAACTTAAAGAAGCAATTTATGCTTCCCTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTATGCTGCGAAACGAACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTGACATCGGTAGTTCCAATTTTAAATGGAAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCATTGAAACTTACAGGATTTCTTAAGGAGAAGATGCAACTGAACAACATAAACTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAAACTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATATGAAGCTATAGGAGAAGGATGGTTTACACTTTCAAAAGAGCGGTTTCAGACAGGAGAGATCTTATTCCAGCCACATCTTGCTGGAGTGTAA 1062 0.4256 MSMVLRKVWEMVSGCNNPSGEVVRADLGALEQLSSDILMQILKLLGPKEAAKLSLVCKALRFQVSDNRLWLHFLQTHQAEPSWDSVFFAETTLTSGYPLPSFVGQRLHLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYSCPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSIPICHYDDTESAKASRRQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLKEKMQLNNINFQSLYTVRTLKEKLCYVALDYEAELSKDTQASYEAIGEGWFTLSKERFQTGEILFQPHLAGV. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07533 353 Gene3D Actin; Chain A, domain 4 274 352 - -
Seca3g07533 353 SUPERFAMILY F-box domain 28 87 IPR036047 GO:0005515
Seca3g07533 353 CDD NBD_sugar-kinase_HSP70_actin 125 269 - -
Seca3g07533 353 Gene3D - 241 273 - -
Seca3g07533 353 ProSiteProfiles F-box domain profile. 27 73 IPR001810 GO:0005515
Seca3g07533 353 SUPERFAMILY Actin-like ATPase domain 123 244 IPR043129 -
Seca3g07533 353 PANTHER ACTIN 166 352 IPR004000 -
Seca3g07533 353 Gene3D - 120 238 - -
Seca3g07533 353 Gene3D - 23 97 - -
Seca3g07533 353 SUPERFAMILY Actin-like ATPase domain 238 352 IPR043129 -
Seca3g07533 353 Pfam Actin 171 351 IPR004000 -
Seca3g07533 353 Pfam F-box domain 31 71 IPR001810 GO:0005515
Seca3g07533 353 SMART fbox_2 33 73 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07533 Seca-Chr3 184047669 184057241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07533 171 353 Cytoskeleton Gene Families AT3G12110 32.812 2.55e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07533 K16616 - gmx:100791973 597.045