Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07482 ATGGAGCGGGAAGGTCCTCCTCCCGCAAACGATCTGTGCTCAGTTTGCCATGGCAACTTTCACATTCCTTGCCAAGCCAATTGCTCTCACTGGTTCTGCGGTAACTGTATAATGCTCGTTTGGCAGCATGGATCAGGTATCCAACCTTGCAAATGCCCTCTCTGTCGCCGTCACATTACTCTCTTGGTTCCTACTGAACACTCCTTATCCCAACGTCAAGACCCTGAAGTTGCTCAGATTCTCTCCAAGATACAAACCTATAATCGTTTCTTTGGTGCCCGTCCAACTGGTCCCCTTCAAAGAATTCAAGATCTCCCCTTCCTGTTACGGAGGCTCATGCGGGAATGTTTGGACCCTCAAAGATCCCTTCCTCTTGTCATCAGAGCTCGTGTTTATATTGCAATGATACTAAGTGCTGTATACATCTTCAGCCCTATTGACATCATTCCTGAAGGGATATTGGGAATAGTTGGTCTCTTGGATGATCTCCTAATTGTGCTCATCTTTTTCCTTCATGTTGCTGCTCTTTATAGATCGGTACTGTACCTCCGTCATGGGGGTTCCTGA 567 0.4691 MEREGPPPANDLCSVCHGNFHIPCQANCSHWFCGNCIMLVWQHGSGIQPCKCPLCRRHITLLVPTEHSLSQRQDPEVAQILSKIQTYNRFFGARPTGPLQRIQDLPFLLRRLMRECLDPQRSLPLVIRARVYIAMILSAVYIFSPIDIIPEGILGIVGLLDDLLIVLIFFLHVAALYRSVLYLRHGGS. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07482 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 106 IPR013083 -
Seca3g07482 188 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Seca3g07482 188 ProSiteProfiles Zinc finger RING-type profile. 13 56 IPR001841 -
Seca3g07482 188 SUPERFAMILY RING/U-box 11 64 - -
Seca3g07482 188 Pfam Protein of unknown function (DUF1232) 133 167 IPR010652 -
Seca3g07482 188 PANTHER UNCHARACTERIZED 5 185 IPR038896 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07482 Seca-Chr3 182775519 182777879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07482 38 188 C3H Transcription Factor Family AT1G72175 74.172 3.54e-68 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07482 K15707 - jre:109000985 288.5