Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07471 ATGTTTCCAAATATGTTTCCATTGGCTACAAGCCAGTTGCAGCCTTTTAGTGCTCTCCCTGTCATGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGCGGTCTTCCTCCTACAGCCAATGAGCAGTCGGTTGCAACTTTCTTTAGTCAGGTTATGGCTAAGATTGGAGGAAATACTGCTGGTCCAGGTGATGCAGTGGTTAATGTTTACATTAACCATGACAAGAAGTTTGCCTTCGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATCATTTTTGAGGGTGCACCTGTAAAGGTCAGGAGACCTACTGATTATAATCCTTCTCTAGCTGCTACCCTCGGCCCAAGCCAACCGAACCCAAACCTTAATCTGGGTGCTGTTGGCTTAACACCTGGATCTGCTGGTGGTCTCGATGGCCCTGATCGGATTTTTGTGGGAGGACTTCCTTATTACTTCACCGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGAGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTCTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTTATGTTACAACCAGCATTAGTGGCAACGAAGGTGGTATGTTTAACTCATGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGACTATGAAGAGATTCTTGATGATATGAGACAGGAATGCTCCAAATTTGCCATTTGTAGTCCCACTTTCTCCCATAAAGAATCAGGCCTAACTTACAGACCGAAGCCTCCATAA 978 0.4499 MFPNMFPLATSQLQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFAICSPTFSHKESGLTYRPKPP. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07471 325 CDD RRM2_U2AF65 156 232 - -
Seca3g07471 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 119 IPR000504 GO:0003723
Seca3g07471 325 SUPERFAMILY RNA-binding domain, RBD 20 122 IPR035979 GO:0003676
Seca3g07471 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 234 IPR000504 GO:0003723
Seca3g07471 325 FunFam U2 snRNP auxiliary factor large subunit 133 248 - -
Seca3g07471 325 Gene3D - 266 316 IPR012677 -
Seca3g07471 325 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 305 IPR006529 GO:0003723|GO:0005634|GO:0006397
Seca3g07471 325 SUPERFAMILY RNA-binding domain, RBD 153 241 IPR035979 GO:0003676
Seca3g07471 325 FunFam U2 snRNP auxiliary factor large subunit 31 132 - -
Seca3g07471 325 Gene3D - 31 132 IPR012677 -
Seca3g07471 325 Gene3D - 147 248 IPR012677 -
Seca3g07471 325 PANTHER RNA-BINDING PROTEIN 1 304 - -
Seca3g07471 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Seca3g07471 325 CDD RRM1_U2AF65 35 117 - -
Seca3g07471 325 SMART rrm1_1 157 230 IPR000504 GO:0003723
Seca3g07471 325 SMART rrm1_1 37 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07471 Seca-Chr3 182465585 182471819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07471 158 248 Eukaryotic Initiation Factors Gene Family AT1G71770 26.596 4.72e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07471 K12837 - gmx:100779915 604.364