Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07442 ATGGGGAGGGGAAAGATTGAGATCAAAAGAATTGAGAACACAACAAATCGGCAAGTGACATTCTGTAAGCGAAGGAATGGACTTCTGAAGAAAGCTTATGAGCTTTCAGTGCTGTGTGATGCTGAAGTGGCTCTCATTGTCTTCTCTAGCCGTGGCCGTCTTTATGAGTATTCTAACAACAACATAAGGTCAACTATTGAGAGGTACAAAAAAGCATGTTCAGATCATTCAAACACAAACACTACCACCGAAATTAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACTTGATGGGAGATGCCTTAAGCACACTGACTGTGAAGGAACTCAAGCAGCTGGAAAACAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCAGAAATTGAATACTTTCAGAAAAGGGTAATTCACGAAGAGATTGAGCTGGAAAATGAAAATCTTTGCCTTCGTACTAAGATAACTGATGTTGAGAGGCTTCAGCAAGTGAACAACATGGTTTCTGGACCAGAGCTGAATGCCATTCAGGCATTAGCTTCTCGTAATTTCTTCAATCCAAACATGATGGAAGGTGGAACTGCCTACCCTCAATCAGACAAGAAGATTCTTCATCTTGGGTGA 684 0.4094 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSNTNTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKRVIHEEIELENENLCLRTKITDVERLQQVNNMVSGPELNAIQALASRNFFNPNMMEGGTAYPQSDKKILHLG. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07442 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca3g07442 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca3g07442 227 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Seca3g07442 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca3g07442 227 Coils Coil 124 144 - -
Seca3g07442 227 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Seca3g07442 227 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Seca3g07442 227 Coils Coil 87 107 - -
Seca3g07442 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca3g07442 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca3g07442 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca3g07442 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Seca3g07442 227 Pfam K-box region 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca3g07442 227 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Seca3g07442 227 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca3g07442 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07442 Seca-Chr3 181854633 181862481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07442 1 227 MADS-box Gene Family AT4G09960 74.786 8.01e-120 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca3g07442 K-box 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07442 K09264 - gmx:100301905 414.461