Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07441 ATGAAAGCCTTGCCTCCTATTAAAATCTTTAGAGGAGAAAACACTATGGGGTCCCAATGTGATTGTCCTTTTTGCAAGGAAGAATTCAAGAATGGGGAGCTGATTCAACCTTTCAGAGTGTGCCTACTTGAATTCCATTCATCTTGCATTAACTCTTGGTTACATGGTAGAAACATTACTTGTCCTATTTGTCGTAGGAATTTGCTAGCAACTAATCTCTCCTTAAGGTACGTATGA 237 0.3882 MKALPPIKIFRGENTMGSQCDCPFCKEEFKNGELIQPFRVCLLEFHSSCINSWLHGRNITCPICRRNLLATNLSLRYV. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07441 78 ProSiteProfiles Zinc finger RING-type profile. 22 65 IPR001841 -
Seca3g07441 78 PANTHER - 11 76 - -
Seca3g07441 78 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 72 IPR013083 -
Seca3g07441 78 Pfam Ring finger domain 21 65 IPR001841 -
Seca3g07441 78 SUPERFAMILY RING/U-box 18 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07441 Seca-Chr3 181840876 181841112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07441 17 70 C3H Transcription Factor Family AT5G47610 38.889 4.21e-09 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07441 - K11982 aprc:113865236 92.4337