Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07436 ATGCAGCCTCGCCGGAGAAGGTGTTTCCGGCCATCAGTGGTGAGGGAATCGAAGCATTTTCTGAAGACCATACTTCCCTCACCCATTCATGCCAACCAAATGAGAATTCCTGAGGACTTTATAACAAGGTATGGTAATGAACTATCCAGTGTTGCTAGAATTAAAGTTCCCTGTGGTTGTGTTTGGAAAATGGGATTGAAGAAATGTGGTAAACACATTTTGTTTTGCAACAAGTGGGAAGAGTTTGTGGAATCCTATTCTATCAGTTATGGTTGCCACCTAGTTTTCAAATATGAAGGGAAATCAAAGTTTAATGTTCTCATATTTGATGCAACTTCTGTTGAGATTTACTATCCATGCAAAGACATGCACCCAAAGTTTCCTAGGATAAGGGCCACGGTTGATCATCAGGACTCTAGCCATCAGACAAGAATGTCAAACTCTGCTTCCAAAAGAGCAAAGGATGCTGCTTCTGCTTCCAATAAAGAGCCAAAAAAACCTTATTTTACTTCAACCTTAAAGAGACAACGTCTGAAGTATGTTCCTGTTGAATTTGCTCAAAAGTATCTCAAGCCAAATGTTCCTATAAAGCTCCAAACTTCTAGTAGAGAGCAGTGGGATGTTTCTTGCGTAAAACATTGTGCCAAGGCAATGATAATGGCAAAGGGAATCCCTAAATTTGCTAGAGAAAACAAACTCTCAGAAGGAGATTCCTTTGTGCTTGAGTTGATCAAGAGGGAGCCACTTGTCCTAAAAGTTACACCATCTCGAGCAGTTGAATATGGCAATTCACGCAGGTGCTGA 804 0.408 MQPRRRRCFRPSVVRESKHFLKTILPSPIHANQMRIPEDFITRYGNELSSVARIKVPCGCVWKMGLKKCGKHILFCNKWEEFVESYSISYGCHLVFKYEGKSKFNVLIFDATSVEIYYPCKDMHPKFPRIRATVDHQDSSHQTRMSNSASKRAKDAASASNKEPKKPYFTSTLKRQRLKYVPVEFAQKYLKPNVPIKLQTSSREQWDVSCVKHCAKAMIMAKGIPKFARENKLSEGDSFVLELIKREPLVLKVTPSRAVEYGNSRRC. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07436 267 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Seca3g07436 267 CDD B3_DNA 18 110 IPR003340 GO:0003677
Seca3g07436 267 Gene3D - 12 113 IPR015300 -
Seca3g07436 267 CDD B3_DNA 167 254 IPR003340 GO:0003677
Seca3g07436 267 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Seca3g07436 267 SUPERFAMILY DNA-binding pseudobarrel domain 163 248 IPR015300 -
Seca3g07436 267 ProSiteProfiles B3 DNA-binding domain profile. 164 257 IPR003340 GO:0003677
Seca3g07436 267 PANTHER B3 DOMAIN-CONTAINING 12 247 - -
Seca3g07436 267 SMART B3_2 168 259 IPR003340 GO:0003677
Seca3g07436 267 SMART B3_2 20 112 IPR003340 GO:0003677
Seca3g07436 267 Pfam B3 DNA binding domain 20 111 IPR003340 GO:0003677
Seca3g07436 267 Pfam B3 DNA binding domain 170 253 IPR003340 GO:0003677
Seca3g07436 267 MobiDBLite consensus disorder prediction 134 166 - -
Seca3g07436 267 Gene3D - 143 262 IPR015300 -
Seca3g07436 267 MobiDBLite consensus disorder prediction 139 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07436 Seca-Chr3 181687704 181690168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07436 138 257 B3 DNA Binding Superfamily AT3G18990 34.127 3.62e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g07436 B3 4.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07436 - - mtr:120575755 259.225