Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07413 ATGGAAAGAATGTTCCCTCCTAATCTTAAGAAGCCCTCAACTTTGAATTCCCATGACAGACCCATGTGTGTCCAAGGTGACTCAGGCCTTGTCCTCACCACTGACCCAAAGCCACGCCTTCGTTGGACCGTTGAGCTTCATGAGCGTTTCGTTGATGCTGTTACTCAGCTTGGAGGACCTGATAAGGCTACTCCTAAAACAATTATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCATCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAGCCCCACAAGGAATTCAATGAGCACTCAATTAAGGATAGCATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGGCTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGTATGCCTCATATACTTATCTTCTGTTAATTAAATCCACAACCACAAGCAATTGA 450 0.4533 MERMFPPNLKKPSTLNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEHSIKDSMRASALELQRNTGSSSAMIGRNMNEYASYTYLLLIKSTTTSN. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07413 149 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 94 IPR017930 -
Seca3g07413 149 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g07413 149 Pfam Myb-like DNA-binding domain 40 88 IPR001005 -
Seca3g07413 149 Gene3D - 36 94 - -
Seca3g07413 149 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Seca3g07413 149 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 92 IPR006447 GO:0003677
Seca3g07413 149 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 121 IPR044848 GO:0003700
Seca3g07413 149 FunFam Myb family transcription factor 36 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07413 Seca-Chr3 181011098 181012250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07413 10 132 G2-like Transcription Factor Family AT1G79430 80.800 4.88e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g07413 Myb_DNA-binding 4.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07413 - - gmx:100807793 257.299