Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07407 ATGGAGAGAAGTAGTGGCAAATATGGTACTTCTGCAAATATGAATGCGAGAAAGGCATTGGCTGATGTTACCAATGTTGGAGGAAACTCTGCAACAGCTATTAGGCTTAATAGCTCCAAAATGAAGGTTTCAGCAGGTTCAAGCACTAAAAAAGTGGGTGTCTCTTTGAGGAAGTCATTCACGGGAAGAGTGCAAAAAAATACTGGCCAAGGTGAAGTTCAGTTAGGTGCTCCCAATAGAGGCACGGATTCAACGGCATCTTTAGATGGTCAGAAGAATAATACAGATGGAGGCCCATCAGTAGTTGTCACAAAGGACAGGTTTGCAAGGAAGCCTTTGTTGCCTACAAATGCAAGCACTTCAAGGAAGTCTTTACCAGTTCCAACTAGGAGGGTAAACAGGGCAGATGAAAATTCTGGATGTTCTGAAACAGCCAATGGTCGAAGTGGTATCCCCACTAAGACAACAGTTAGAAGAGTTAGTTCCCAACCAAATAATGCAAGAAGCCATCTATGGAAGACTCGAGCAAGTGATGGCTTTGTTCAAATGGTTCAAACTAATACTGTACAAGCATCCTCGAGGAAGTCCACCAAGCCTATTGCTAAGACCACGCTCAAGGCTTCTACATCTCAAAGGACTTTAAAAGCTAAATCCATGTCAGGTCAGAACAAACCAAAATCAACTACTACAGTGTCATGTAAGGACGAGGGAAAAACTGCTATAATGTCATCTAAGGATGAGGGAAAAACTGCTACAATGTCATCTAAGGATGAGGAAACCGTTTCTTTATCTCTTCCTGAGAATGGTTTGGTGATAGCTTCTGATGACGCAAATGAAAGACATCTCCCCTCTAAGGGAGAGAGCAACTCGAGAACAAATTTGTCAGAGTTCATTCCAAGGAAAAAGTCCACCCGCCGGAAATCTTATACAACTTCATTGATGGAAAGATCTAAGTGTCTCAAGGAAAGTGGTGAAGCTAGGGAGCAGGATAACCTACCAAATATAGATAATGAATGTAATCACCTAGAAGTTTCTGAATACATTGATGAGATATATCAATACTATTGGGTTACTGAGGCACATAGTCAAGCTCTGGCAAATTACATGTCAATTCAGACAGACATTACTCCTCATATGCGTGGCATATTGATCAACTGGCTAATTGAAGTGCACTTCAAATTTGATTTGATGCCTGAAACACTGTATCTCACAGTGACATTGTTAGATCAATATCTTTCCCAAGTGACTATCAAAAAGACTGATATGCAGTTAGTTGGTCTTACGGCGCTTTTGCTGGCTTCAAAGTATGAGGATTTTTGGCATCCAAGGGTAAGAAGCCATTTATCGAACATTACTTTTGAAGAAAAGATTGCATTGTTCATTGTGATGATTGAGAAGCTTATTCTTAGAAAATTGAAGTTTCGTCTTAATGCACCTACTCATTACGTTTTTATGGTGAGGTTTCTCAAGGCTGCACAATCAGATAAGAAGCTTGAACACATGGCATTCTTTCTCATTGACTTATGCTTAGTTGAATACGAAGCTTTAGCATTCAAGCCTTCATTACTATGTGCATCAGCTCTCTATGTTGCACGATGTACTTTGCAAATAACCCCACCATGGACCCCACTGCTTCACAAGCATGCGCGTTATGAAGTTCCACAGCTCAGGGATTGTGCGGATATGATATTGAAGTTCCATAAAGTTGCCAGGATGGGAAAATTAACAGTTACAGCTGAAAAATACTCTAGACAGGATTTCAGCAGGGTTGCAGCTGTGGAACCGTTGGATAGGCTTCCCTTGTAA 1806 0.4092 MERSSGKYGTSANMNARKALADVTNVGGNSATAIRLNSSKMKVSAGSSTKKVGVSLRKSFTGRVQKNTGQGEVQLGAPNRGTDSTASLDGQKNNTDGGPSVVVTKDRFARKPLLPTNASTSRKSLPVPTRRVNRADENSGCSETANGRSGIPTKTTVRRVSSQPNNARSHLWKTRASDGFVQMVQTNTVQASSRKSTKPIAKTTLKASTSQRTLKAKSMSGQNKPKSTTTVSCKDEGKTAIMSSKDEGKTATMSSKDEETVSLSLPENGLVIASDDANERHLPSKGESNSRTNLSEFIPRKKSTRRKSYTTSLMERSKCLKESGEAREQDNLPNIDNECNHLEVSEYIDEIYQYYWVTEAHSQALANYMSIQTDITPHMRGILINWLIEVHFKFDLMPETLYLTVTLLDQYLSQVTIKKTDMQLVGLTALLLASKYEDFWHPRVRSHLSNITFEEKIALFIVMIEKLILRKLKFRLNAPTHYVFMVRFLKAAQSDKKLEHMAFFLIDLCLVEYEALAFKPSLLCASALYVARCTLQITPPWTPLLHKHARYEVPQLRDCADMILKFHKVARMGKLTVTAEKYSRQDFSRVAAVEPLDRLPL. 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07407 601 MobiDBLite consensus disorder prediction 138 152 - -
Seca3g07407 601 FunFam Cyclin N-terminal domain containing 2 365 474 - -
Seca3g07407 601 PANTHER CYCLINS 302 574 IPR039361 -
Seca3g07407 601 MobiDBLite consensus disorder prediction 40 100 - -
Seca3g07407 601 Pfam Cyclin, C-terminal domain 479 595 IPR004367 -
Seca3g07407 601 SUPERFAMILY Cyclin-like 340 477 IPR036915 -
Seca3g07407 601 Pfam Cyclin, N-terminal domain 350 477 IPR006671 -
Seca3g07407 601 MobiDBLite consensus disorder prediction 40 102 - -
Seca3g07407 601 MobiDBLite consensus disorder prediction 207 237 - -
Seca3g07407 601 MobiDBLite consensus disorder prediction 207 262 - -
Seca3g07407 601 FunFam putative cyclin-B3-1 isoform X3 475 600 - -
Seca3g07407 601 PIRSF Cyclin_A_B_D_E 2 146 IPR046965 GO:0016538|GO:0044772
Seca3g07407 601 PIRSF Cyclin_A_B_D_E 152 600 IPR046965 GO:0016538|GO:0044772
Seca3g07407 601 MobiDBLite consensus disorder prediction 116 152 - -
Seca3g07407 601 Gene3D - 472 599 - -
Seca3g07407 601 SUPERFAMILY Cyclin-like 479 598 IPR036915 -
Seca3g07407 601 Gene3D - 364 471 - -
Seca3g07407 601 MobiDBLite consensus disorder prediction 245 262 - -
Seca3g07407 601 MobiDBLite consensus disorder prediction 274 309 - -
Seca3g07407 601 SMART Cyclin_C_2 479 596 IPR004367 -
Seca3g07407 601 SMART cyclin_7 483 565 IPR013763 -
Seca3g07407 601 SMART cyclin_7 385 469 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07407 Seca-Chr3 180654448 180665127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07407 17 601 Core Cell Cycle Gene Families AT1G16330 42.975 2.59e-144 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07407 K21777 - gmx:100808850 796.193