Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07400 ATGGACGATGCTTTTTCCTTTGATGCCTTCAACTTTGTTGATGACAACAACGTGGAGAACAATGGTGGAGTTACAGATCAGGTGGAGCCCGCAACTCGAGCTTCTATTGAGAATCTTGAAAGGATCACGGTAGATGGAACAAATGCAGATTCTATGTTTGTGTGCTCCATATGTCTTGAGGTGTTCTCAATTGGGTCAACAGCAATTCGCATGCCTAACCCATGTTGTCATGTCTTTCATGAACACTGCATCATTAGGTGGCTCAATACTTGTAACACACTGCATCATTATTTCTCTCTTCATGCCTACCCACCAAAAACTTTTTCTCAAATCCTGATACATCTTGGTGGAACCAGGATGTATAGACATCTTACCCTTATGAACTTCCTCTAA 393 0.4173 MDDAFSFDAFNFVDDNNVENNGGVTDQVEPATRASIENLERITVDGTNADSMFVCSICLEVFSIGSTAIRMPNPCCHVFHEHCIIRWLNTCNTLHHYFSLHAYPPKTFSQILIHLGGTRMYRHLTLMNFL. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07400 130 ProSiteProfiles Zinc finger RING-type profile. 55 91 IPR001841 -
Seca3g07400 130 PANTHER SI:CH211-59O9.10 27 93 - -
Seca3g07400 130 Pfam Ring finger domain 55 92 IPR001841 -
Seca3g07400 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Seca3g07400 130 SUPERFAMILY RING/U-box 54 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07400 Seca-Chr3 180054729 180055142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07400 30 93 C3H Transcription Factor Family AT5G01980 34.375 2.25e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07400 - K11982 lang:109353994 90.1225