Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07397 ATGGACGATGCTTTTTCCTTTGATGCCTTCAACTTTGTTGATGACAACAACGTGGAGAACAATGGTGGAGTTATAGATCAGGTGGAGCCCGCAACTCGAGCTTCTATTGAGAATCTTGAAAGGATCACGGTAGATGGAACAAATGCAGATTCTATGTCTGTGTGCTCTATATGTCTTGAGGTGTTCTCAATTGGGTCAACAGCAATTCGCATGCCTAACCCATGTTGTCATGTCTTTCATGAACACTGCATCATTAGGTGGCTCAATACTTGTAACACATGCCCTTTGTGTCGCAAGAGCATCTAA 306 0.4314 MDDAFSFDAFNFVDDNNVENNGGVIDQVEPATRASIENLERITVDGTNADSMSVCSICLEVFSIGSTAIRMPNPCCHVFHEHCIIRWLNTCNTCPLCRKSI. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07397 101 ProSiteProfiles Zinc finger RING-type profile. 55 98 IPR001841 -
Seca3g07397 101 SUPERFAMILY RING/U-box 54 101 - -
Seca3g07397 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 101 IPR013083 -
Seca3g07397 101 Pfam Ring finger domain 55 98 IPR001841 -
Seca3g07397 101 PANTHER SI:CH211-59O9.10 27 101 - -
Seca3g07397 101 SMART ring_2 55 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07397 Seca-Chr3 179771501 179771827 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07397 30 101 C3H Transcription Factor Family AT5G01980 37.500 8.39e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07397 - K11982 lang:109353994 107.071