Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07393 ATGGACGATGCTTTTTTCTTTGATGCCTTCAACTTTGTTGATGACAACAACGTGCAGAACAATGGTGGAGTTTTAGATCAGGTGGAGCCCGCAACTCATGCTTCTATTGAGAATCTTGAAAGGATCACGATAGATGGAACAACAAAGTCTTCTTCAGTCACAAATGCAGAGTCTATGTCTGTGTTCTCAATTGAGTCAACAACAATTCGCATGCCTAACCCATGTTGCCATGTCTTTCATGAACACTGCATCATTAGGTGGCTCAACACTTGTAACACATGCTCTTTGTGTCGCAAGAGCATCTAA 306 0.4183 MDDAFFFDAFNFVDDNNVQNNGGVLDQVEPATHASIENLERITIDGTTKSSSVTNAESMSVFSIESTTIRMPNPCCHVFHEHCIIRWLNTCNTCSLCRKSI. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07393 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 101 IPR013083 -
Seca3g07393 101 SUPERFAMILY RING/U-box 65 101 - -
Seca3g07393 101 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 28 99 - -
Seca3g07393 101 Pfam Ring finger domain 66 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07393 Seca-Chr3 179511262 179511588 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07393 30 101 C3H Transcription Factor Family AT5G01980 33.333 1.20e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07393 - K11982 lang:109353994 88.9669