Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07388 ATGCAACGGTTCATCATAGATGATGGTGGTTACGTTTTTGATTCATTCGACTTGCATCATGGCTTCAACAACAGTGGTGGTGTTTTAGGAAGAATACAAGAGTCAATTATGGAGGATGGTTATATCTTTGATTCTCTAGACTTTGGTCACATCAACAACAACCCTAATGACAGAGTTTTTGGGGTGAAGCCAGCAACTTCAGTTTCTATCCAAAATCTTGAAAGGGTCACAATAGATGGAACAACAGAGTCTTCTTCTTCAGGTACAGATTCAAATTCTTCTATGCCGGAGTGTTCCATATGTCTTGGGGTACTCTCAATTGGGTCGACAGCAATTCGCATGCCTAACCCATGTTGTCATGTCTTTCATGAAGGCTGCATCATTAGGTGGCTCAATACATCTAACACATGCCCTTTGTGTCGTAGCAGTATTTAG 435 0.4115 MQRFIIDDGGYVFDSFDLHHGFNNSGGVLGRIQESIMEDGYIFDSLDFGHINNNPNDRVFGVKPATSVSIQNLERVTIDGTTESSSSGTDSNSSMPECSICLGVLSIGSTAIRMPNPCCHVFHEGCIIRWLNTSNTCPLCRSSI. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07388 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 144 IPR013083 -
Seca3g07388 144 SMART ringv_2 97 141 IPR011016 GO:0008270
Seca3g07388 144 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 54 141 - -
Seca3g07388 144 SMART ring_2 98 140 IPR001841 -
Seca3g07388 144 ProSiteProfiles Zinc finger RING-type profile. 98 141 IPR001841 -
Seca3g07388 144 Pfam Ring finger domain 97 141 IPR001841 -
Seca3g07388 144 SUPERFAMILY RING/U-box 97 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07388 Seca-Chr3 179335174 179335608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07388 61 144 C3H Transcription Factor Family AT1G14200 35.714 6.36e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07388 - K11982 lang:109353994 117.087