Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07383 ATGTCAGTGTTGATCGTGACGAGCTTGGGGGACCTGGTGATCGATTTACACACCCAAAAATGCCCCCTGACCTGCAAGAACTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGCTGTCTATTTCACACTGTTCAAAAGGATTTCACTGCTCAGACTGGCGATCCAACTGGAACTGGGACCGGTGGTGATTCCATCTACAAGTTTCTATATGGTGATCAAGCTCGGTTTTTCAGCGATGAAATTCATATTGATCTGAAGCATTCTAAGACTGGAACAGTTGCCATGGCAAGTGCGGGAGAGAATTTGAATGCTTCACAGTTTTATATCACTCTGCGTGATGATCTCGATTACCTCGATGGAAAGCACACAACTGTGGAAGTTGTTTCTTTAGCTGCTAAGATTTGTCTATCTTTGCAGGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTCGAATAAATGAGGCTTATGTGGATGAGAAGGGCAGACCATATAAAAATATCCGAATCAAACACACATACATCCTGGAGGACCCTTATGATGATCCTTCTCAGTTAGCTGAGTTCATTCCTGAAGCCTCACCAGAAGGAAAACCTAAAGATGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTGCCAATGGATGAACAATTAAACCCAGCAGAGCTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTCGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCCGAGATTAAGCCTCCAGATAATGTACTATTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGTTATGCTTTCATAGAGTTTGAGGACAAACAGGCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGACGATCGAAGAATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAATACAGGCGGAGAGATCACAAGGGTAAAGGTGGTGGTTGCTTCAAATGCGGTTCTACAGATCACATTGCCAAGGATTGCACTGGAGATGCTACAATGAAACAGCAACCTGCAAAATACATTTTGAAGGACGATAATGCCCAACGTGGTGGAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACACAGAAAGTCCAAGGCGAGATATAAAACACCAAAGGCATGACAGGGATGACCTAGTTGATAAAAAAGGTAGGAAGGAAAATTTTAAAGATCATATTCATAGAGGTCATAGGGATCAGGAGATGGTAGGCTCGAACAACAGAGATAGGCATGGTGATAGAGGCAGAGGGCACGAGGGAAATGGAGATGATAAAACACGATCTGAAAGAGGTGTGAGAGATACAAGAGATTTGGATTCCCATGCTGACAAGAAAGACAGAGAAAAGCATATGGGAAGACATAGAGATGATGACTACAGGCGAAAACATGAGCTAGACTCTAGAAAAAGAGACATGGATGATAACTACATAGAAAGACGGAGTAGTCGAGATGATAGGAGAAAAGCTGATACTAGCCATTTGGAGAGAAGGAATGAGAGAGATTATAGAACTGAAGACAGTGGAAGGCAAGATGCGAAGATTGATTCCAGACGAAGAAAACGAAGCCCCGATGATAAAGACTACAGACATAGAAGGGAGGATGAAGATTATAAACATAGAAGGGAGGAGGATAAAGATTACAAACATAGAAGGGAGGATGAAGATTACAAACATAGAAGGGAAGAACGTGGACATAGAAGACAAGATACTGAATCTGATGACTATCCTCGTAGAAGGCATCACAGTGACAGGAGATGA 1896 0.4182 MSVLIVTSLGDLVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTTVEVVSLAAKICLSLQVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLAEFIPEASPEGKPKDEVDDDVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRRDHKGKGGGCFKCGSTDHIAKDCTGDATMKQQPAKYILKDDNAQRGGDNARYEMVFDGDNTESPRRDIKHQRHDRDDLVDKKGRKENFKDHIHRGHRDQEMVGSNNRDRHGDRGRGHEGNGDDKTRSERGVRDTRDLDSHADKKDREKHMGRHRDDDYRRKHELDSRKRDMDDNYIERRSSRDDRRKADTSHLERRNERDYRTEDSGRQDAKIDSRRRKRSPDDKDYRHRREDEDYKHRREEDKDYKHRREDEDYKHRREERGHRRQDTESDDYPRRRHHSDRR. 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07383 631 Pfam Zinc knuckle 356 371 IPR001878 GO:0003676|GO:0008270
Seca3g07383 631 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Seca3g07383 631 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Seca3g07383 631 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Seca3g07383 631 SUPERFAMILY Retrovirus zinc finger-like domains 345 376 IPR036875 GO:0003676|GO:0008270
Seca3g07383 631 SMART c2hcfinal6 356 372 IPR001878 GO:0003676|GO:0008270
Seca3g07383 631 MobiDBLite consensus disorder prediction 405 631 - -
Seca3g07383 631 Gene3D - 245 399 IPR012677 -
Seca3g07383 631 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 177 IPR002130 GO:0000413|GO:0003755
Seca3g07383 631 SMART rrm1_1 260 333 IPR000504 GO:0003723
Seca3g07383 631 Gene3D - 1 189 IPR029000 -
Seca3g07383 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 331 IPR000504 GO:0003723
Seca3g07383 631 ProSiteProfiles Zinc finger CCHC-type profile. 357 370 IPR001878 GO:0003676|GO:0008270
Seca3g07383 631 SUPERFAMILY Cyclophilin-like 1 192 IPR029000 -
Seca3g07383 631 SUPERFAMILY RNA-binding domain, RBD 245 355 IPR035979 GO:0003676
Seca3g07383 631 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 175 IPR002130 GO:0000413|GO:0003755
Seca3g07383 631 FunFam Peptidyl-prolyl cis-trans isomerase 1 188 - -
Seca3g07383 631 FunFam Peptidyl-prolyl cis-trans isomerase 198 339 - -
Seca3g07383 631 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 529 IPR035542 -
Seca3g07383 631 CDD RRM_PPIL4 256 338 - -
Seca3g07383 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 337 IPR000504 GO:0003723
Seca3g07383 631 MobiDBLite consensus disorder prediction 401 631 - -
Seca3g07383 631 CDD cyclophilin_RRM 4 185 IPR035538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07383 Seca-Chr3 179040554 179047590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07383 7 182 U-box Gene Family AT5G67530 38.636 5.79e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07383 K12735 - gmx:100776900 996.882