Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07381 ATGGATTTGACAAGGAAAAGTGGTGTCCTCTTATGCTTATTTGGACTATGTTTCTTAGTTGCTGGTTGCTCTGCGAGGCCATTAAGGAGTATTACTTTAAGGGAGATCAACAACCCTAACACAACATCTTATCACCCTGAAGTCAAACTGCACTTAGAAAACAATAATCAGGTGATAATGGAAAATGGTATCGTTCGTGTCACTTTGCAAAGACCGGAGGGCAATGTATTAGGAATATCATATAATGGAATAGATAATGTGCTTGAAGGTCGCAACAAATATAGCAATAGAGGGTATTTTGACGTTGTTTGGAATATACCAGGAAATCGTTCGAATTATTGGGGGTACATATTTTTTAATTTCTCTATATCAATATATGGGAGTAAATTTTCTGTTATAGAGGCGAACGAGAATGAAGTTGAAGTTTCATTTTCAAGAACGTGGGACAATATGGACAGCGCAAGTCTCCCCTTAAACATAGATAAAAGGTTTATATTACGTAGAGGCAGTTCAGGATTTTACATGTATGCTATAGTTGAGCGTTCCGAAGGTTTTCCTGCACTTGAGATTGATCACATTAGGATGGTTTTCAAGCTCCAGATGGACAGGTTCCACTATATGGCTATAGCAGAAGATAGACAGCGAGTGATGCCAACGCCAGAAGATAGATCTACTGGGCAACGCCTTGATTATGATGAAGCTGTTTTAATAACCCAACCTAGTAACCCAGAACTTCAAGGAGAGGTGGATGACAAATACCAATACTCTATTGAGAACAAAGATAACAATCTTCATGGTTGGATTAACTTGGACTCCAACTCCAATGAATCTGTGGGCTTTTGGATGATAACACCAAGTAGCGAGTTTCGTAACGGTGGGCCAACCCACCAAGCCCTTACTTCTCATGTTGGTCCTGTCACTCTCAATATACTTCATACCACTCACTATGGTGGGAAGGAGATAAACATGGCATTTGCAGAAGGGGAGCCTTTCAAGAAAGTTTATGGCCCCTTTTTTGTGTATCTCAACAAAGGAGTTTCACAAGCTCTTTGGACTGATGCTGCACAACAGCTGTCTGAGGAAATCAAAAGCTGGCCCTATGATTTCCCTAAATCAGATGATTTTTTCAAACCCAATAAACGGGGAACAGTGCAAGGACAATTACTAGTCCAAGACAGGTACATTAATGAAGGGAGATTTCAATATGGCAATAATGCTTATGTTGGTCTGGCTCTGCCTGGAGATTTGGGATCATGGCAAAGACAATGCAAGGGTTACCAATTTTGGACTCAAGCTGACAAGATAGGACACTTCACAATTGAAAATGTTGTCCCTGGAGACTACAATTTGTATGCATGGGTTCCTGGCATTTTTGGGGATTACAAATATAACACTACTATAACAATCACACCAGGATATATGATCCAATTGGGTTCCCTAATATTCAATCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTTTATGTTCCAGATCATTATCCTAACCTTGTGAACCGATTATACATTGGGAAACCACAACACAAGTTTAGGCAATATGGATTGTGGCAGCGTTACACTGAGTTATATCCAAATCAGGACCTTGTTTATAATGTCGGTGTTAGTGATTATCGTAAAGATTGGTTTTATGCTCAGGTTACCAGGAACATAGGAAACAACACATTTTGCCCAACCACATGGGAGATTAGATTTCATCTACCATTTGTTACAAGAGGAAACTACACTCTTCAACTTGCCTTGGCCTCAGCCGCAAGTTCTAGCTTAGTGGTTCGGTTCAATAACCCTGTGGCTATTCCTATGCACTTCTCTACGGGATTGATAGGCCAAGACAATGGCATAGCAAGACATGGCATCCATGGATTGCACTGGCCTTACAGCATTGAAGTACCTAGCCATCTATTGGTCGAAGGAAACAACATAATCTATCTGAGGCAGGCCAAAGGTGTAACTCCTTTCCAAGGAATTATGTATGACTACATCCGTTTGGAAAGACCTGAGACTTCAAGGATTTAA 2061 0.4071 MDLTRKSGVLLCLFGLCFLVAGCSARPLRSITLREINNPNTTSYHPEVKLHLENNNQVIMENGIVRVTLQRPEGNVLGISYNGIDNVLEGRNKYSNRGYFDVVWNIPGNRSNYWGYIFFNFSISIYGSKFSVIEANENEVEVSFSRTWDNMDSASLPLNIDKRFILRRGSSGFYMYAIVERSEGFPALEIDHIRMVFKLQMDRFHYMAIAEDRQRVMPTPEDRSTGQRLDYDEAVLITQPSNPELQGEVDDKYQYSIENKDNNLHGWINLDSNSNESVGFWMITPSSEFRNGGPTHQALTSHVGPVTLNILHTTHYGGKEINMAFAEGEPFKKVYGPFFVYLNKGVSQALWTDAAQQLSEEIKSWPYDFPKSDDFFKPNKRGTVQGQLLVQDRYINEGRFQYGNNAYVGLALPGDLGSWQRQCKGYQFWTQADKIGHFTIENVVPGDYNLYAWVPGIFGDYKYNTTITITPGYMIQLGSLIFNPPRNGPTIWEIGIPDRSAAEFYVPDHYPNLVNRLYIGKPQHKFRQYGLWQRYTELYPNQDLVYNVGVSDYRKDWFYAQVTRNIGNNTFCPTTWEIRFHLPFVTRGNYTLQLALASAASSSLVVRFNNPVAIPMHFSTGLIGQDNGIARHGIHGLHWPYSIEVPSHLLVEGNNIIYLRQAKGVTPFQGIMYDYIRLERPETSRI. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07381 686 Pfam Rhamnogalacturonate lyase family 38 249 IPR010325 -
Seca3g07381 686 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 682 - -
Seca3g07381 686 CDD RGL4_C 492 679 - -
Seca3g07381 686 FunFam Rhamnogalacturonate lyase B 377 477 - -
Seca3g07381 686 SUPERFAMILY Galactose-binding domain-like 487 679 IPR008979 -
Seca3g07381 686 Gene3D - 51 361 IPR014718 GO:0030246
Seca3g07381 686 Pfam Polysaccharide lyase family 4, domain II 404 473 IPR029413 -
Seca3g07381 686 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Seca3g07381 686 SUPERFAMILY Starch-binding domain-like 379 477 IPR013784 GO:0030246
Seca3g07381 686 CDD RGL4_M 380 480 IPR029413 -
Seca3g07381 686 Gene3D - 377 476 - -
Seca3g07381 686 SUPERFAMILY Galactose mutarotase-like 53 345 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca3g07381 686 Gene3D - 487 679 - -
Seca3g07381 686 CDD RGL4_N 53 345 - -
Seca3g07381 686 Pfam Polysaccharide lyase family 4, domain III 490 678 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07381 Seca-Chr3 179003411 179010621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07381 48 683 Polysaccharide Lyase AT1G09910 53.727 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07381 K18195 - gmx:100792575 1040.02