Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07380 ATGGAAGACTTAAACAAGTGGCTATCCTTCTACATGAATGAAAGTGTCAACCATGACTTTGCCATCAGAAGGTTTTGCCCTGCAAGAATGGAGCAAGAGCAAGGAGGAGAGTGCCAAGATCAAGAGGCAGTACTTGATGATATTGAGTTATGTTTTTCTGATGCTACCAGCACTCCTTGTTTGGCTTCCACAGAGGTTGATGACTTTGTTGATAGCTTCATCAACATGGATCAGTGTGAGTATGACAAAGAAGATCAAGAATCCCAAGAGAAGCATCAAAGTTTTGATCACTTTGTGGTGAATGAAGAAGATGACCCTGATGCTGATGCATACTCCATGGTGAATGATGTCATTGGATATGTTCCTACCACTATGGAGGATGAAGAATTGGAGATCTATGAAAATGTTGCAATTCCCATGGAGGAGGAAGAAGTTGAAATGAGTGGCTCTTTTTGTGCTATACCTGAGCTTGTTCCATGTGCAGAAGAGGCCAGCCTTGGCATGGACCAAGGATTAGACTTGGTTCACATGTTGTTGGCATGTGCTGAGGCTGTAGGCTGCAGAGACACCCAACAAGCAGAGTTGCTTCTTAACAGAATCTGGGCTTTGGCAAGTCCTTCAGGTGATTCATTGCAGAGAGTCTCCTACTGTTTTGCCACAGGATTGAAGTGTAGGTTGTCACTTCTTCCTCATAATGTCATCACAAATGGTACATTAACAAGTACTTCTATGGATATCCCTTTGATCACTAGGGAGAATAAGTTGGAATCTTTTCAACTCCTTTACCAAACCACACCTTACATTGCTTTTGGTTTCATGGCTGCAAATGAAGCTATCTGCCAAGCATCAAAAGGAAAGAGCTCCATACACATAATTGATCTAGGAATGGAGCATACCCTTCAATGGCCTTCCCTTGTAAGGGTCCTTGCTTCAAGGCCTGAGGGGCCACCAAAGCTCCGGATCACAGGATTAAACAGCAATGAAAACAACCCAAAACTTCAAACAAGCATGAATAAGCTTGTGGAGGAAGCAAGCTCATTGGGTATACCTCTTGAATTCCACATAATATCAGAGCCTACAACCCCATCTCTTCTTACTATGGAGAAGCTTAAATTGAGAGAAGGTGAAGCTTTGTTTGTTAACAGTATCTTACAATTGCACAAATATGTCAAAGAAAGTAGAGGCTATCTGAAGGAAATTCTCCAATCAATAAAGAAGCTAAGTCCAACAGCTCTTACAGTGGTAGAGCAAGACACAAACCACAATGGTCCATTTTTTCTTGGGAGATTTTTGGAATCACTGCATTATTACTCAGCTATATTTGATTCTCTTGAGGCAAGTATGCCAAGAAATAGCCAACAGAGGATGAAAATAGAGAGATTACACTTTGCAGAGGAAATTCTTAACATTGTAGCTTGTGAAGGTCCAGATAGAATGGAAAGACATGAAAGGGTAGACCAATGGAGAAGACAATTAGGCAGAGCAGGATTTCAGGTAATGCCACTGAAATGCACAAGCCAAGCTAGAATGATGCTTTCTGTTTATGACTGTGATGGATATACATTGTCCAGTGAGAAAGGTAGCCTTCTACTTGGATGGAAAGGAAGGCCAGTAATGATGGCTTCTGCATGGCAAGTGGCAAGTGTGTGA 1650 0.4182 MEDLNKWLSFYMNESVNHDFAIRRFCPARMEQEQGGECQDQEAVLDDIELCFSDATSTPCLASTEVDDFVDSFINMDQCEYDKEDQESQEKHQSFDHFVVNEEDDPDADAYSMVNDVIGYVPTTMEDEELEIYENVAIPMEEEEVEMSGSFCAIPELVPCAEEASLGMDQGLDLVHMLLACAEAVGCRDTQQAELLLNRIWALASPSGDSLQRVSYCFATGLKCRLSLLPHNVITNGTLTSTSMDIPLITRENKLESFQLLYQTTPYIAFGFMAANEAICQASKGKSSIHIIDLGMEHTLQWPSLVRVLASRPEGPPKLRITGLNSNENNPKLQTSMNKLVEEASSLGIPLEFHIISEPTTPSLLTMEKLKLREGEALFVNSILQLHKYVKESRGYLKEILQSIKKLSPTALTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASMPRNSQQRMKIERLHFAEEILNIVACEGPDRMERHERVDQWRRQLGRAGFQVMPLKCTSQARMMLSVYDCDGYTLSSEKGSLLLGWKGRPVMMASAWQVASV. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07380 549 ProSiteProfiles GRAS family profile. 165 545 IPR005202 -
Seca3g07380 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 128 544 IPR005202 -
Seca3g07380 549 Pfam GRAS domain family 174 545 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07380 Seca-Chr3 178952305 178953954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07380 169 549 GRAS Transcription Factor Family AT1G66350 39.378 3.14e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g07380 GRAS 1.8e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07380 - - gmx:100814931 903.664