Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07379 ATGATGGAACAATCAAGATTCAACAAACAGCTTCAATGCGATAACATGGACCCTAGAAGTGAGGAATTCCAGCCTGGATCTCAGTCTGTAATGCAGAACTATCTGGATGGAATGCATACTAATAGAAGACCATCTGACCATTACACATCAGATGTTAAACCAGTACTTAATTATTCAATACAGACCGGTGAGGAATTTGCTCTTGAATTTATGAGAGATAGGGTGAATCTCAGGAAGCCTGTATTTTCAAATGCCAGTGATTCCAATTATACAACTAGTTATATGGATCTGAAAGGCGTTTTAGGCATCAGTCATGCAGGATCTGAAAGTGGGTCCGGCATTTCTATGCTCTCAACGGTTGATAAAGCCCCAACAGAGTTTAACAGACAGAGTACATCATTACATGGGGATAGAAGCAATTATGGGTCAATTCGATCAATACCGAGAACTTCATTGAATCAAGAGACTAGTCAATTTGTGCGTGGGTATGGCTCTTCTGTTGGTTCTGATAGCACATCAATGACAATGAAGTGTCTTTGTAGCTTTGGTGGTAGAATATTACCACGACCGAGTGATGGAAAACTGAGGTATGTTGGAGGTCAAACACGTATTCTTCGTCTAAGAAAGGACATATCTTGGCAGGAGCTCAGGCAGAAAGCATTGTTAATCTATAATCTGGTTCATGTACTAAAGTATCAACTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTATCATCTGATGAGGATTTGCAGAATATGATGGAGGAATATAATCTTCTAGAAGATAGAGCACACTCACAAAAGCTTAGGATGTTTTTGTTCTCAATGAGTGATTTGGAAGATGCTCAGTTTGCTCTTAGTAGCATTGGTGATGATTCTGAGGTCCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAACAACTCAACCCCACTCGGTGTCAGCTTTTCAGCAGATGATTTACATGGATTGGACAGGCAAACTATGGATAGGGAGACTAGTAGAGTTGCTGTAGAATCTATAGGTGTCAGCAATGCTCCATTGACTAATGGATTTGATTCTTCATCAGCTGTTCAGTCTTCACAACCAATATTACCAACTTCTTCAAAAGCTTATGAAACTGATCAACTGTCCTATGGTGACCAAATGATACAATTTGGGGAAACTAGTCATCAATATCTTGTTCACCATGGCCTTAATCCCGCTCCTAACCCAGTGGTTGGAGAGACTCCTATTTCTATGGCTCCTCATCTGCTGAATAATCAACAAAGGATTCTGAATCAAGACCATCCACCTAGTGGATTACGGATGCAAAATTCAGAATTGCCTACAATGCAGGAGAAAAAGATAGTTGATAGTTCAGTTAAACAAGAGAATGACCCTGGTAAAGTTTTATCCTCGGAAACCCCATCCCCAGCTCCCTCACAGCCCTTTGATGGTTACTTGAAAAATAATTATCATGAAGCATCAGTTGTAGTTACCATGCCGGAGGGGCATCTACCTTCACTGCCTTCAACAAAAAAGGTTCAGCACCAGGATTATGAAGAGGCCTCTTCTACAACTAGCAGTTTATTTGTTCCTGCTTATATGGATTCCCAGTCCAATGACATTGATTTGAGTTGTCTTCATCCTCCTCCACTTCCTAAAAGAGTTTACTACTCAGAAAGAACTCCCAGGGAGCAAGTAGAGGTCTTGAATCGGTCCTCAAAGTCAGATGACACGCACAGCTCTCAGTTTCATGTGTCAGATTTACTTTCTGATGTCAAGCCAGAGGATCCAGTAACAGAAACTGGTGACAACTTGCATGATGGTAATCTATTAAACCCAACTGAAAATTTGAGTATTGCAGCAAAGCCCTTGCCTGCAGATGACCATACAATTGACAATGGGTTTGCCAAACATCAAATGAATAATCTGTTGCCTGATGCAAATGGTCAGATTAAGTCACACCTATCTGAGCACACGGGTCCGGAGTTGAAGCAGCTGTTACTGAGCGATGACGTAAGTAAAGATGTGGAAACTGAACATTCTTGCAAAGATAATCATATCAGGCCCTTGCTTGATGAAACCAAAACCAAAGATGGTAATTCAGATCTTCCTGCTATGCATCACGTTTCCTCTGTTAAGAACCTTGATGATCCAGCATCCAATCTTCCAGAGATTGATTGGGGTGAGGCCTCTGGGAAGGAATATAATGATAATCATATGGTGCAAGAACTACCTGTTTCTTTAGCTGGGAATATAACCAAAGATGTTTCTCAGGACTTTCCTCCAAATGTTGTTTCCAAACAAGCAGAAGGTGACATTCTCATTGATATTGATGATCGATTTCCCCGTGAACTGCTTTCTGATATGTTTTCTAAAGCAATTCTTGCAGAAGATCCCTCCAGTCAATATGCACTATCCCCAAATGGAATAGGCTTAAGCATAAATATGGAAAATCATGAACCTAAACGGTGGTCTTATTTTCAAAAGTTGGCACAAGAAGGGCTTGATAATGTCTCTCTTATTGATCAGGATCATCTTGGCTTTCCACCTATGATAGGAAAAACTGGAGATAATAGAGATCATCATGCTATGCCTCTAACAACTGATGGAATTCCTCTAGATCATGAGGATTCCCACCTCAATTTTGGTGAAGAAAATCAGGACTTACATAGAAGGATTGGAATAGAAACCACTGTTCTGAAGTCCAATTATGATCAATCCCAACTTACGGACACTGAAAGTATGCAGTTTGATGCTATGATGGAAAACCTAAGAGCACATGAGTCAGAGTATGAGGATGGCAAGTTTGAAACAAAAAATTGCAATCTACCTCCACTTGATCCTTCTTTAGGAGATTTTGATATCAGTACTGTGCAGGTCATTAAGAATGAAGATCTTGAAGAGTTGAGGGAACTAGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTCACCGGTCGATCATCTGAGCAAGAGAGATTGACTGTAGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGCGTGGTACAACATGGACCAGGAGGAACGATGGCCACAGTTACAGAATTTATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTGAACTTGAAAGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATTAAAAGAAATACCTTGGTTACTGGTGGTGTGCGGGGGACTCTACCTTGGATGGCACCAGAGCTGTTGAATGGAAGCAGCAACAAGGTCTCGGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTATTATGGGAAATTCTAACCGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATTATAGGTGGGATTGTAAATAACACATTAAGGCCAACCATTCCAAGTCATTGTGATCCTGAATGGAGAACATTGATGGAGCAATGTTGGGCACCCAATCCTGGAGCCAGGCCTTCCTTCACAGAAATTGCAAGTCGCTTGCGCATAATGTCTGCAGCAGCAGCTAGCCAAACTAAAACACAGGGCCAAAAGACATCTAAATGA 3750 0.4107 MMEQSRFNKQLQCDNMDPRSEEFQPGSQSVMQNYLDGMHTNRRPSDHYTSDVKPVLNYSIQTGEEFALEFMRDRVNLRKPVFSNASDSNYTTSYMDLKGVLGISHAGSESGSGISMLSTVDKAPTEFNRQSTSLHGDRSNYGSIRSIPRTSLNQETSQFVRGYGSSVGSDSTSMTMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWQELRQKALLIYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEEYNLLEDRAHSQKLRMFLFSMSDLEDAQFALSSIGDDSEVQYVVAVNGMDLGSRNNSTPLGVSFSADDLHGLDRQTMDRETSRVAVESIGVSNAPLTNGFDSSSAVQSSQPILPTSSKAYETDQLSYGDQMIQFGETSHQYLVHHGLNPAPNPVVGETPISMAPHLLNNQQRILNQDHPPSGLRMQNSELPTMQEKKIVDSSVKQENDPGKVLSSETPSPAPSQPFDGYLKNNYHEASVVVTMPEGHLPSLPSTKKVQHQDYEEASSTTSSLFVPAYMDSQSNDIDLSCLHPPPLPKRVYYSERTPREQVEVLNRSSKSDDTHSSQFHVSDLLSDVKPEDPVTETGDNLHDGNLLNPTENLSIAAKPLPADDHTIDNGFAKHQMNNLLPDANGQIKSHLSEHTGPELKQLLLSDDVSKDVETEHSCKDNHIRPLLDETKTKDGNSDLPAMHHVSSVKNLDDPASNLPEIDWGEASGKEYNDNHMVQELPVSLAGNITKDVSQDFPPNVVSKQAEGDILIDIDDRFPRELLSDMFSKAILAEDPSSQYALSPNGIGLSINMENHEPKRWSYFQKLAQEGLDNVSLIDQDHLGFPPMIGKTGDNRDHHAMPLTTDGIPLDHEDSHLNFGEENQDLHRRIGIETTVLKSNYDQSQLTDTESMQFDAMMENLRAHESEYEDGKFETKNCNLPPLDPSLGDFDISTVQVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVTEFMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSHCDPEWRTLMEQCWAPNPGARPSFTEIASRLRIMSAAAASQTKTQGQKTSK. 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07379 1249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1091 1103 IPR008271 GO:0004672|GO:0006468
Seca3g07379 1249 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 959 1053 - -
Seca3g07379 1249 Gene3D Transferase(Phosphotransferase) domain 1 1054 1249 - -
Seca3g07379 1249 SMART serkin_6 966 1232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07379 1249 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g07379 1249 Pfam PB1 domain 192 275 IPR000270 GO:0005515
Seca3g07379 1249 CDD STKc_MAP3K-like 972 1229 - -
Seca3g07379 1249 Gene3D - 194 277 - -
Seca3g07379 1249 CDD PB1_UP2 179 275 - -
Seca3g07379 1249 SMART PB1_new 190 277 IPR000270 GO:0005515
Seca3g07379 1249 MobiDBLite consensus disorder prediction 566 581 - -
Seca3g07379 1249 Coils Coil 251 271 - -
Seca3g07379 1249 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 195 277 - -
Seca3g07379 1249 MobiDBLite consensus disorder prediction 463 478 - -
Seca3g07379 1249 PANTHER SERINE-THREONINE PROTEIN KINASE 220 1230 - -
Seca3g07379 1249 PRINTS Tyrosine kinase catalytic domain signature 1085 1103 IPR001245 GO:0004672|GO:0006468
Seca3g07379 1249 PRINTS Tyrosine kinase catalytic domain signature 1200 1222 IPR001245 GO:0004672|GO:0006468
Seca3g07379 1249 PRINTS Tyrosine kinase catalytic domain signature 1156 1178 IPR001245 GO:0004672|GO:0006468
Seca3g07379 1249 PRINTS Tyrosine kinase catalytic domain signature 1048 1061 IPR001245 GO:0004672|GO:0006468
Seca3g07379 1249 SUPERFAMILY CAD & PB1 domains 191 279 - -
Seca3g07379 1249 ProSiteProfiles Protein kinase domain profile. 966 1231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07379 1249 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1054 1247 - -
Seca3g07379 1249 MobiDBLite consensus disorder prediction 566 607 - -
Seca3g07379 1249 Gene3D Phosphorylase Kinase; domain 1 959 1053 - -
Seca3g07379 1249 Pfam Protein tyrosine and serine/threonine kinase 967 1229 IPR001245 GO:0004672|GO:0006468
Seca3g07379 1249 ProSitePatterns Protein kinases ATP-binding region signature. 972 997 IPR017441 GO:0005524
Seca3g07379 1249 MobiDBLite consensus disorder prediction 456 484 - -
Seca3g07379 1249 SUPERFAMILY Protein kinase-like (PK-like) 956 1229 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07379 Seca-Chr3 178941610 178950683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07379 39 643 MAP Kinase Kinase Kinase AT1G16270 39.327 8.77e-93 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca3g07379 PK_Tyr_Ser-Thr 2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07379 - - gmx:100817937 2009.96