Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07376 ATGACACTGAGCACTTACTTCAACTTGGACTTTCATCAAATTCCAAATTCACAAATGATCAGCACCTTCAATGAAGCAACACCAGTACTTGCACCAGAAAATCACTTCCTTTCTTATTCAGAAGAAAGCTTCTTCCTTCCAAACACCACCTTTAGTTCCTATTTTAACCATACAGGTTTTCTCTACCCTGAAACCTACCCTCATTTCCTTCCTTGCACATCTGTTTATGAATATGACCCCATCATTTCATTCTCCAATGATAATTACCCACCTGATCAAGATTACAACTTTCTTCCAAATCCAAAGCGCCACAAGTGTTTTGAGCATTCTTCACTAAACCTTATTCAACCAAGTACCAATTTCTTTGATGGGTTTGTCCCAAATCCTTGTTCTTTCCCAACAGAGGAACTACCAGTACCACTACCAGAAGTAGAACTCTGTTCTGCTATGACAGAGTTCAAAGTTCCAGAGCTTCCACAGGGTGGTTTTGATGCAAATAATTACCAACATGAGAAGAAAACCAACGAGAAAATTCCCATCTCAGCACAGAGCCTAGCAGCACGTGAAAGAAGGAGGAAGATCACTGAGAAGACACAGGAGCTAGGGAAGTTGGTACCTGGAGGGTGTAAGATGAACACAGCTGAAATGTTGCATGCAGCTGGAAAGTATGTTCAGTACTTGCAGGCTCAAGTTGAGATGCTTCAACTTATGAAGACACTCCAAGAAGAAGAGGCAGCACCTTCAATTGATGAAGATCTTCATACCCTGCTTGTCTCTCCCTCTATTCAAGAGAAAATGTACTCGGAAGAGAAGTGCTTTGTTCCAAAAGACTTCATTACCACTTTGACAAATCATAACCGTCTTGGATCAAGTCCTTCCATCCTTGAAGATCTCAAACAGCTGATTGGGACAGACATTAAGAAGAAAGAAAAGCAAGAGTAG 942 0.4108 MTLSTYFNLDFHQIPNSQMISTFNEATPVLAPENHFLSYSEESFFLPNTTFSSYFNHTGFLYPETYPHFLPCTSVYEYDPIISFSNDNYPPDQDYNFLPNPKRHKCFEHSSLNLIQPSTNFFDGFVPNPCSFPTEELPVPLPEVELCSAMTEFKVPELPQGGFDANNYQHEKKTNEKIPISAQSLAARERRRKITEKTQELGKLVPGGCKMNTAEMLHAAGKYVQYLQAQVEMLQLMKTLQEEEAAPSIDEDLHTLLVSPSIQEKMYSEEKCFVPKDFITTLTNHNRLGSSPSILEDLKQLIGTDIKKKEKQE. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07376 313 CDD bHLH_AtbHLH_like 183 235 IPR045239 -
Seca3g07376 313 Gene3D - 179 248 IPR036638 GO:0046983
Seca3g07376 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 241 IPR036638 GO:0046983
Seca3g07376 313 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 164 274 IPR045843 GO:0003700|GO:0006355
Seca3g07376 313 SMART finulus 184 233 IPR011598 GO:0046983
Seca3g07376 313 Pfam Helix-loop-helix DNA-binding domain 185 228 IPR011598 GO:0046983
Seca3g07376 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07376 Seca-Chr3 178893099 178895362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07376 55 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 34.884 5.68e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g07376 HLH 4.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07376 - - lang:109363529 306.605