Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07340 ATGCAGAAGGAGACATTGCAAGGGCAGATATGTGTTATGGATATAATAATAGTAATGGGGGTTGCCAAAGGTGGGAGGATATACCAACATGTAGGCATCCTGGTGATGTATTTCAGAAAAAGACAGGTAACTTCAATTATGAAAAGGCAACCGCTGAACCGAATACGAGTTATGGCATCACTGATTGCATGGCCATTTGCTGGAGCAACTGTAACTGCACTGCATTCACAGAGTTTTATCGTAATGGAACTGGATGTATATTTTTTCAATGGGATTCAACTTATGCTTTTGACAATATTGGAGAAAGATATTATGTACTATATACTCTATGCATATGCAGGTACAAAAACGTGGATATGGGTAAGTACAGTAATAGCAGCTGCTCTGCTCATAATATGTCTATCCATTCTATGCCTAGCCTTGAAGAAAAGAAAATATGGGCTTAGAGAGAAAAAGAGTGAGAGAAAAGACATGAAGATGCTAGATTTGGCAACTCCTAGTGGATCCTCCAGTATCAAAGATTTTGAAGATGGTTTGAAGAAGGGACATGATATAAAAATACTTAACTATACATCAATTTTGGAAGCAACAAATGACTTTTCACCGCAAAACAAGCTAGGACAGGGAGGCTTTGGACCTGTTTATAAGGGAATTTTTCCAACAGGACAAGAAGTTGCTATTAAAAGACTTTCAAAAGCTTCTGGACAAGGAGTTGTGGAATTTAAAAATGAGCTTACACTCATATGTGAACTTCAGCACACGAATCTTGTACAACTACTTGGTTGCTGCATACATGAAGAAGAAAGGATTCTAATCTATGAATATATGCCAAATAAAATCTTGGACTTCTATATATTCGATTGTACAAGAAGCAAGTTCCTAGACTGGAAGAAGCGTTTCAATATAATAGAAGGAATTTCTCAAGGATTACTCTATCTTCACAAGTACTCAAGACTCAAAATCATCCATAGAGACTTGAAGGCTAGCAACATACTTCTTGATGAGAATATGAACCCAAAAATTTCTGATTTTGGTATGGCAAGACTGTTTACACAACAGGAATCCACAATAAATACCAACAGGATTGTTGGGACATATGGTTATATGTCTCCAGAGTATGCCATGGCAGGAATTTGCTCTACAAAATCCGATGTATATAGCTTTGGAGTATTGTTGCTCGAAATTGTTAGTGGAAGAAGAAACAATAGTTTCTATGATGCTGACCGCCCACTAAATTTAATAGGATATGCATGGGAGCTATGGAATGATGGTGTGTGTCTCAAGTTGATGGATCCATCATTAAATGACATGATTATTCCTGATGAAGTGCAAAGATGCATTCATGTTGGTCTCTTGTGTGTAGAGCATTATGCAAATGATCGACCTACAATGTTGGAAGTTATATCAATGCTAACAAATAAAAGTGCAGTTGTTACCTTGCCAAAAAGACCAGCATTCTATGTTGGAGGAGAGATCCTTGAGGAGACAATATCTTCAAGAGTGTCCACCATTGATTTTACGAAGGACATTTCTACCTCTTCTGAAGTATAA 1551 0.372 MQKETLQGQICVMDIIIVMGVAKGGRIYQHVGILVMYFRKRQVTSIMKRQPLNRIRVMASLIAWPFAGATVTALHSQSFIVMELDVYFFNGIQLMLLTILEKDIMYYILYAYAGTKTWIWVSTVIAAALLIICLSILCLALKKRKYGLREKKSERKDMKMLDLATPSGSSSIKDFEDGLKKGHDIKILNYTSILEATNDFSPQNKLGQGGFGPVYKGIFPTGQEVAIKRLSKASGQGVVEFKNELTLICELQHTNLVQLLGCCIHEEERILIYEYMPNKILDFYIFDCTRSKFLDWKKRFNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARLFTQQESTINTNRIVGTYGYMSPEYAMAGICSTKSDVYSFGVLLLEIVSGRRNNSFYDADRPLNLIGYAWELWNDGVCLKLMDPSLNDMIIPDEVQRCIHVGLLCVEHYANDRPTMLEVISMLTNKSAVVTLPKRPAFYVGGEILEETISSRVSTIDFTKDISTSSEV. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07340 516 SMART serkin_6 200 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07340 516 SUPERFAMILY Protein kinase-like (PK-like) 186 488 IPR011009 -
Seca3g07340 516 ProSiteProfiles Protein kinase domain profile. 200 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07340 516 Pfam Protein tyrosine and serine/threonine kinase 203 470 IPR001245 GO:0004672|GO:0006468
Seca3g07340 516 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 276 479 - -
Seca3g07340 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Seca3g07340 516 CDD STKc_IRAK 206 473 - -
Seca3g07340 516 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 119 494 - -
Seca3g07340 516 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 166 275 - -
Seca3g07340 516 Gene3D Transferase(Phosphotransferase) domain 1 276 480 - -
Seca3g07340 516 Gene3D Phosphorylase Kinase; domain 1 168 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07340 Seca-Chr3 177514842 177520935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07340 188 487 Receptor kinase-like Gene Family AT3G45860 57.947 1.71e-124 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07340 PK_Tyr_Ser-Thr 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07340 - - vun:114168194 610.527