Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07310 ATGATGCTGCGTGGATGGACTTATGATGTGTTCCTGAGTTTCAGAGGTGAAGATACCAGGAGAAGCTTCACAGGCTCTCTGTATCATGGTTTGCGCCAAAGGGGTATCAATGTTTTCATAGATGATGAGAAGCTTAGAAGAGGGGAAGAGATATCCCCAGCTCTTCTTAGAGCCATTGAAGAGTCTAGGATTTCTATCATTGTGTTCTCTCAGAACTATGCATCTTCAAGGTGGTGTCTTGATGAGCTTGTTAAGATCCTTGAGTGTTGGAAAACAAAGGGGCAGATGGTTTGGCCAGTTTTCTACCATGTTGACCCTTCTATGGTAAGGCATCAGAGAGAAAGTTTTGGCAGAGCAATGGCTCAACATGAAGTCAGATTCAAGGATGATGTTGAAAGGTTGCAAAAGTGGAAACAGGCATTGTTTGAGGCAGCCAATTTTTCAGGTTGGAGCTTAGAAAATGAGTATGAGTTTGAGCTTATCCAAAGGATCATTGAGGAGGCTTCTAGTAAATTAAATCACACCCTTTTGCATATTGCTGAATGCCCTGTTGGACTAGAGACTAGAATATCAGAAGTGAAGTCACTTCTGCATATTGAACCTGGTGAAGACATTCGTGTCATTGGAATCTATGGATTTGGAGGTATAGGTAAAACAACAATTGCAAGGGCTTTATACAACTTGATTGCTGATCAGTTTGAAGCTACATGTTTCCTTGCTGATATAAGAGAAAGTTCAAATCAAAGACAAGGCTTAGTGCAACTTCAAGAAGCACTTCTTTTTGATACAGTTGGGGACAAGAACATTAAGCTAGGAAATATTTACAAAGGAATCCCTATTATTATGAAAAGGTTATGTTGCAAAAAAGTTCTTTTGATTCTTGATGATGTTGACAAATTGGAGCAGTTGCAAGCATTGGCAGGAGGAAGAGATTGGTTTGGATTTGGAAGTGTAATAATAATAACAACAAGAGATAAGCAATTGCTAGCTGCTCATCAGGTTGACAAAACATATGAAGTAAAGAAATTAAATCATAGTGAAGCTTTTGAACTGTTCACTTGGAATGCCTTTAAAAGGAAAGCACCTGATGCAGGCTATATGGAGATTTCTAACCGTGTGGTGCTCTATGCTGAGGGGCTTCCATTGGCTTTGAAAGTAATGGGTTCTAACTTGTTTGGTAAAACAGTGGGAGAATGGAAATCTGCACTGGCCAAATATGAAAAAATTCCTAATAAAGAGGTTCAGAATGTACTAAGAGTAACCTATGATAATCTAGAAGAGAATGAGAAGGAAATTTTCCTGGATATAGCATGTTTCTTCAAGGGAGAGACAGTGGAATATGTTGAAAAGACACTGCAAGCTTGTGGTTTCTATCCAGAATTTGGTATTAGTGTACTTCTTGATAGATCTCTTGTAAGTATTGATGAATATAATAGATTGAGAATGCATGATCTGATACAAGATATGGGTAGGGAAATTGTTAGAGAAGTTTCTCCATTAGAGCCTGCTAAGAGGAGCAGACTATGGTATCATGAAGATGTTTTTGAAGTACTCACTGAAAACACGGGGACTTATAGAATTCAAGGCATGATGGTGGATCTCCCTGATCAATATATGGTACACTTGAAAGGTGATGCCTTCAAAAAGATGAGAAATCTTAAAATTCTTATTGTTCGAAATGGTCAATTTTATGGAAGCCCCCAACATCTTCCAAACAATTTAAGGTTGCTTGACTGGATGGAATATCCTTCATCATCTTTACCATCTAGCTTTCATCCAAAGAAACTTGTTGTGCTCAACTTGTCACGTAGTCGTTTTACATTGCAAGAGCCATTCAAGTATTTGGATTCTTTGACATCTATGGATTTGAGTCACTGTGAATTCTTAACAAAGCTACCTGACATTTCTGGAGCCCCAAATTTAACAGAACTAACTCTTGATTATTGTACAAATCTAGAAGAGGTTCATGACTCTGTTGGATTCCTTGAGAAACTTATTGAGTTGAGGGCTTATGGATGCACCAAGCTTAAGGTTTTTCCACGTGCCATCAGATTGTCATCATTGAGAAGTCTTATTCTTAATTGGTGCTCAAGTCTTCAAAGTTTCCCTGCTATTTTGGGGAAAATGGAAAATCTCATATCTATTTCCATAGAAGGTACTGGTATTGAACAATTGCCTCCTTCCTTTGGAAATCTTGTGGGGCTTCAAGAATTAAGCATGACATCTTGCTTAAGTCTCAAGGAACTGCCTGACAACTTTGATATGTTGCAAAATCTTAGAAACCTTGATACTGAAGGCTGTCCACAACTTCGAAATTTCTTGACAAAGTTGAGAGAATTGGGACAATCTACCCCTACCTTTGGTAACATTGAATCTCTGAATCTAGAAAACTGTGGTCTTATAGATGAAGATCTTCCCATAATTTTCAGTTGTTTCCCAAAGTTAGCATCAGTAGTCCTTTCAGGAAATAATTTTGTCACTCTTCCAAGCTGCATACAAGAATTTCCTTTCTTGGAATTACTTCACTTGGACAACTGCAAACAACTCCAAGAAATTCAAGGCATTCCTCCCAATTTACAATTCATCAATGCAACAAACTGCATATCATTGACTGCAGAGTCATCAAACTTGTTATTAGGCCAGGAAACTTTTGAGGCATGTCAGTTACAAGTTATGGTACCTGGAACAAGGATTCCAGAATGGTTTGATCACCAAACCAAAGGAGAATATATGACCTTTTGGGTACATAAAAAATTTCCAGCAATTATTTTATGCTTTGCTCTTGCAGTAGAGGGTGAAATGAAGAAGAGTTTCAATTGTGAAATCCGCTTCTATATAAATGGTGATGAAATTTTTGAACTGGAAATTCCAAGAAGCTTTCAAGAAATGGTAACAGATCATGTGTGGCTGTTTGACTTATGTACTCATCCATCCACCCAGTGGCATAATCTTGATTTATATCTAGTGGATGACTGGAATCAGGTTGAGATTTCATGTGAGAAGATAAGTGGTGAATCAAATGTGACTGTGAGCTGGTGTGGAGTTCATGTGTGTAAGCAAGAAGCTAACATGAAGGATATCTTATTTAAAGATCCTGATCTTGATCAAGATTCAAGTAGAGACACTGACTTTGATACTGATTTGGACACAAACAATAAAGAAAGAAAAAATTCAATTGAAGATTTCCAATATTGCATGAGTGTAAATGATGACAGCTACAATTTCAATTACTTGGAATTGGATAGGCAAATAGAGGAATGCTGGAAAATAAGTGACACTGGCATGGACCAGAACCAAGATGAGATTTTATTCCATCCTACAACATTGGATAGTGTTACTAAAGATTCAATAACTTCATTGTGTTTTGGAGGCACCAGTAGTGTCAAAGATTGTGGATATAACATAGTAGCTGCTGATCATTCAGAAAAATCTCAACCAAAATCCCTAGTCACAAGTTTTGTGCAGAGTCCAAATGTTCAGGGACCAAGTTCTACTGTACTATCCAACAAAATTACAAGAGGGGAGCTGCCTCAAAATGGCAACTTCATTATGGGGCTTCCAACTACTGTTGAGTTTGTAACAGATCAAACCAATTTAACTATAGATGATGTAGACATGGAAACATTTTATGCTATTCTGGATGCTGAGACCTCAGTTCTTTCACTTTCCAATGACACCAGAGAGGTTTCTGAATTGGCTGACAGAATGCCAAGTGAAGAGACACAGAAAGCATTGAAGACACTTCAAGACTTTCTCACCAAAGACTTTTCTGTTCTGTTGGGGCCTGATGAGTACAGTACCATGAAAGCTACCTTAGACTACCTCACCAATTTACCTGCAGAAGATAGAATATCAGTGGAAATAAGATCATTGATAATAGAAGTTTCAAGACAGTTCACTCGCTGGAGTTGGGATTACACACATGAAAGCAAGAAAATAAAGTCTACAAAGGCCAAATTGTTGAAATTTGATGAACTAGAAGAGGGTCTTGAAGCTAACAAGATCTGTTTCAAGGAAGTCATGTACTTGGAAAGTGAGTTGTGTAATGAGTTGGCCTATTTGGAGGAAAGAAAGAAGGAGCTTGAAGAACAAATAAATGCTGTTAAAGCTAACATTTCTGCTTCACAAGCAGCCAGGAACATGGCTGCTCATACAAAGAGAGAAATCTTTGGTGAAGCAAAGATTCTAAAAGTTCAAAGAGATGGGTTAAGGGAACAAGTGCCACGCCTGAGAGATGAGCAGGAATTAGCTAAGAAAATTCAGGCAAATATCAGAGCTGAATGGTCAAAGCTTGGAGAAAAATTTAACAACAACTTAAGTGTTGGGATGTCAAGTATTAGTCCCACATTGGATAGGAATGAGTGA 4365 0.3796 MMLRGWTYDVFLSFRGEDTRRSFTGSLYHGLRQRGINVFIDDEKLRRGEEISPALLRAIEESRISIIVFSQNYASSRWCLDELVKILECWKTKGQMVWPVFYHVDPSMVRHQRESFGRAMAQHEVRFKDDVERLQKWKQALFEAANFSGWSLENEYEFELIQRIIEEASSKLNHTLLHIAECPVGLETRISEVKSLLHIEPGEDIRVIGIYGFGGIGKTTIARALYNLIADQFEATCFLADIRESSNQRQGLVQLQEALLFDTVGDKNIKLGNIYKGIPIIMKRLCCKKVLLILDDVDKLEQLQALAGGRDWFGFGSVIIITTRDKQLLAAHQVDKTYEVKKLNHSEAFELFTWNAFKRKAPDAGYMEISNRVVLYAEGLPLALKVMGSNLFGKTVGEWKSALAKYEKIPNKEVQNVLRVTYDNLEENEKEIFLDIACFFKGETVEYVEKTLQACGFYPEFGISVLLDRSLVSIDEYNRLRMHDLIQDMGREIVREVSPLEPAKRSRLWYHEDVFEVLTENTGTYRIQGMMVDLPDQYMVHLKGDAFKKMRNLKILIVRNGQFYGSPQHLPNNLRLLDWMEYPSSSLPSSFHPKKLVVLNLSRSRFTLQEPFKYLDSLTSMDLSHCEFLTKLPDISGAPNLTELTLDYCTNLEEVHDSVGFLEKLIELRAYGCTKLKVFPRAIRLSSLRSLILNWCSSLQSFPAILGKMENLISISIEGTGIEQLPPSFGNLVGLQELSMTSCLSLKELPDNFDMLQNLRNLDTEGCPQLRNFLTKLRELGQSTPTFGNIESLNLENCGLIDEDLPIIFSCFPKLASVVLSGNNFVTLPSCIQEFPFLELLHLDNCKQLQEIQGIPPNLQFINATNCISLTAESSNLLLGQETFEACQLQVMVPGTRIPEWFDHQTKGEYMTFWVHKKFPAIILCFALAVEGEMKKSFNCEIRFYINGDEIFELEIPRSFQEMVTDHVWLFDLCTHPSTQWHNLDLYLVDDWNQVEISCEKISGESNVTVSWCGVHVCKQEANMKDILFKDPDLDQDSSRDTDFDTDLDTNNKERKNSIEDFQYCMSVNDDSYNFNYLELDRQIEECWKISDTGMDQNQDEILFHPTTLDSVTKDSITSLCFGGTSSVKDCGYNIVAADHSEKSQPKSLVTSFVQSPNVQGPSSTVLSNKITRGELPQNGNFIMGLPTTVEFVTDQTNLTIDDVDMETFYAILDAETSVLSLSNDTREVSELADRMPSEETQKALKTLQDFLTKDFSVLLGPDEYSTMKATLDYLTNLPAEDRISVEIRSLIIEVSRQFTRWSWDYTHESKKIKSTKAKLLKFDELEEGLEANKICFKEVMYLESELCNELAYLEERKKELEEQINAVKANISASQAARNMAAHTKREIFGEAKILKVQRDGLREQVPRLRDEQELAKKIQANIRAEWSKLGEKFNNNLSVGMSSISPTLDRNE. 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07310 1454 SUPERFAMILY L domain-like 530 876 - -
Seca3g07310 1454 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 703 IPR044974 GO:0006952
Seca3g07310 1454 Coils Coil 1393 1413 - -
Seca3g07310 1454 Pfam TIR domain 8 176 IPR000157 GO:0007165
Seca3g07310 1454 Pfam C-JID domain 893 1018 IPR045344 -
Seca3g07310 1454 Gene3D Ribonuclease Inhibitor 533 703 IPR032675 -
Seca3g07310 1454 Gene3D Ribonuclease Inhibitor 704 881 IPR032675 -
Seca3g07310 1454 PRINTS Disease resistance protein signature 284 298 - -
Seca3g07310 1454 PRINTS Disease resistance protein signature 207 222 - -
Seca3g07310 1454 PRINTS Disease resistance protein signature 613 629 - -
Seca3g07310 1454 PRINTS Disease resistance protein signature 377 391 - -
Seca3g07310 1454 Coils Coil 1344 1378 - -
Seca3g07310 1454 Gene3D - 4 170 IPR035897 -
Seca3g07310 1454 Gene3D - 342 426 IPR042197 -
Seca3g07310 1454 Gene3D - 171 338 IPR027417 -
Seca3g07310 1454 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 174 - -
Seca3g07310 1454 Pfam NB-ARC domain 187 419 IPR002182 GO:0043531
Seca3g07310 1454 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Seca3g07310 1454 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
Seca3g07310 1454 SMART till_3 7 147 IPR000157 GO:0007165
Seca3g07310 1454 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Seca3g07310 1454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07310 Seca-Chr3 174336893 174343180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07310 8 780 WRKY Transcription Factor Family AT4G12020 31.925 7.81e-94 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07310 - - ccaj:109810288 2336.99