Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07301 ATGTCCCCAGCGGCAGCTCCATCATCTTCCACCACCGTTACCGGCGTCGGTCTCGGCTACGGCATTGCCATCGCCGTCAGTATCCTCGTCCTCATCTCCACCATCATGCTTGCTTCCTACGCCTGCGTCCGTATCAAGGCCCAAGGTCGCCGCGGCTCCTACCATGCCGACACTGACCGCGAAATAACCATCCATGATACTATCTCAGGCCGGCCCGTGCCGGTGGTCTTGGGCCTGGAAAAGCCCATGATTGAGGCCTACCCAAAGTTGGTTGTTGGGGAGAGCCGGCGATTGCCCAAGCCCAACGAAGGCCCGTGTGCCATCTGCTTGTCCGATTATCTTCCGAAAGAGACGATACGGTGCGTTCCGGACTGCCACCATTGCTTCCACGCCGAATGTGTGGACGAGTGGCTCCAGATGAGTGCCACGTGTCCCTTGTGTCGGAACTCTCCCGCTCCATCGCCGTCACCTACGCCGGTGGCCACGCCTCTGTCTGAACTGGTTCCTCTGGCTTTTCACGCCAGGTGA 528 0.5985 MSPAAAPSSSTTVTGVGLGYGIAIAVSILVLISTIMLASYACVRIKAQGRRGSYHADTDREITIHDTISGRPVPVVLGLEKPMIEAYPKLVVGESRRLPKPNEGPCAICLSDYLPKETIRCVPDCHHCFHAECVDEWLQMSATCPLCRNSPAPSPSPTPVATPLSELVPLAFHAR. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07301 175 CDD RING-H2_EL5-like 106 148 - -
Seca3g07301 175 SUPERFAMILY RING/U-box 100 157 - -
Seca3g07301 175 Pfam Ring finger domain 106 148 IPR001841 -
Seca3g07301 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 153 IPR013083 -
Seca3g07301 175 PANTHER RING-H2 FINGER PROTEIN ATL67 7 173 IPR044289 GO:0016567|GO:0016740
Seca3g07301 175 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Seca3g07301 175 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07301 Seca-Chr3 173814931 173815458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07301 1 175 C3H Transcription Factor Family AT5G07040 58.989 1.58e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07301 - - lja:Lj3g3v0787250.1 266.159