Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07291 ATGGCATCTTCTTCAAATTCACCATGTGCAGCATGCAAATTTCTAAGGAGAAAGTGTCAACCAGAGTGTGTGTTTGCACCTTATTTCCCACCAGATCAGCCTCATAAGTTTGCAAATGTTCACAGAATATTTGGTGCTAGCAATGTCTCCAAGCTTCTCAATGACTTGCACCCTCACCAGCGTGAAGATGCTGTGAATTCCCTTGCCTATGAAGCAGAGATGCGCCTCCGTGACCCTGTTAATGGCTGTGTAGGAATCATCTCACTCCTTCACCATCAGCTCCGCCAGCTACAAATGGACCTTTTCTGTGCAAAATCTGAACTTTCAAGAATCCAAAACATTGGCATGGTCAATACCGGCCATGGCCTCATTGCTGCTGCCGCCACCACCGCCAACCACCACAACATGTCAAACATCAGTAGCGGTGGCCATCAACATCAGTTTTTTCCTAGGGATCAATATCAACAACAGCAGCATGTAGTTAGGAACTTTGACTATGAGGCTAATGTATTGGCTATGAACATATCTACAAGTTTTGGGCAACTAAATCAGATTCAGCAGCCTAGTGCTGCTGCTGCTGCTGATGACCACCACACTGTCCATCCCTCTTAG 612 0.4608 MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPHKFANVHRIFGASNVSKLLNDLHPHQREDAVNSLAYEAEMRLRDPVNGCVGIISLLHHQLRQLQMDLFCAKSELSRIQNIGMVNTGHGLIAAAATTANHHNMSNISSGGHQHQFFPRDQYQQQQHVVRNFDYEANVLAMNISTSFGQLNQIQQPSAAAAADDHHTVHPS. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07291 203 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Seca3g07291 203 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Seca3g07291 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07291 Seca-Chr3 173460983 173461594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07291 2 203 AS2 family AT1G65620 61.576 4.46e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g07291 LOB 2.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07291 - - gmx:100819502 276.944