Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07279 ATGAGTTCGTCAAGGCTTACTCTGCTCACCTCAAGCGATCTGGCAAGATTCATTTTCCTTATTCTTTTCTTCTTTTTTGGTTCTACACAGATGGAGCTTCCTGAATGGACAGACATTGTGAAGACTGCAAGATTTAAGGAGTTGGCTCCTTATGATCCAGATTGGTACTATGTTAGAGCTGCTTCCATGGCAAGAAAGATCTACTTGAGAGGAGGACTTGGTGTTGGTGCCTTTCAGAGAATTTATGGTGGGAGCAAGAGGAATGGTAGTCGCCCACCTCATTTCTGCAAGAGCAGTGGAGCTATTGCTCGTCACATTCTCCAACAGTTGCAGAACATGAGCATCATTGAACTGGACACCAAGGGTGGCAGGAGAATCACTTCCAGTGGTCGTCGGGATCTTGACCAAGTGGCTGGACGGATTGTGGTTGCACCTTGA 438 0.4658 MSSSRLTLLTSSDLARFIFLILFFFFGSTQMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMSIIELDTKGGRRITSSGRRDLDQVAGRIVVAP. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07279 145 SUPERFAMILY "Winged helix" DNA-binding domain 27 143 IPR036390 -
Seca3g07279 145 Pfam Ribosomal protein S19e 29 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca3g07279 145 ProSitePatterns Ribosomal protein S19e signature. 92 111 IPR018277 GO:0003735|GO:0005840|GO:0006412
Seca3g07279 145 PANTHER 40S RIBOSOMAL PROTEIN S19 27 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca3g07279 145 Gene3D - 11 144 IPR036388 -
Seca3g07279 145 FunFam 40S ribosomal protein S19 9 145 - -
Seca3g07279 145 SMART Ribosomal_S19e_2 28 144 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07279 Seca-Chr3 172795107 172797033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07279 28 145 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 84.746 1.61e-75 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07279 K02966 - gmx:100305587 235.728