Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07277 ATGAACGATGACAATTTGCCACCAGTTCTTGGGCTTAGGAACTATATTTTTGGGTGCGGTATGCCTTTTGAGAAGCAACTGACAAAAAGCGATTTGAGGGTAGATCAAAATAGATTGTTGCTGAACAAGAATCATGTGGAAACATCTTTCTTGCCCTTGTTGAGAGAAGGTGAAAGCATTAAGGAAGGGATAGCAGTCATTGCCTATAATATGGATGGCAATGTGTTTACCATGACATTCAAGATTTGGGCAGATAAGTACTATGTGCTCATGGGAGGGTGGAAAGCTTTCTTCCAAGCACACACATTGCAAATTCAAGATTATGTCAAAGTGTGA 336 0.4018 MNDDNLPPVLGLRNYIFGCGMPFEKQLTKSDLRVDQNRLLLNKNHVETSFLPLLREGESIKEGIAVIAYNMDGNVFTMTFKIWADKYYVLMGGWKAFFQAHTLQIQDYVKV. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07277 111 Gene3D - 18 111 IPR015300 -
Seca3g07277 111 CDD B3_DNA 23 109 IPR003340 GO:0003677
Seca3g07277 111 Pfam B3 DNA binding domain 23 109 IPR003340 GO:0003677
Seca3g07277 111 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 19 110 IPR005508 GO:0003677
Seca3g07277 111 SUPERFAMILY DNA-binding pseudobarrel domain 23 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07277 Seca-Chr3 172689871 172690206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07277 22 109 B3 DNA Binding Superfamily AT1G20600 42.222 2.18e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g07277 B3 5.4e-08 CL0405