Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07276 ATGTCGCAAAAGAACTCTTGGAATAAAAGAAAAACCTGCAGCCATATCGGCTATGAGGATTTTACCGAGGAAGAATATGAAGTATGCAAAGCGCTTCTTTCTTTGAAAGGAGATACTCAAGATCAAGAGGAGCATGAGGACTTCCCAGCAGAAGAATATAAAGTAACTGAAGCTCTTCTTTCTTTAAAAAGAAGCCAAGAGAAGAAGAAGCATAAATTGAATGAAGCCGATCAAGATGCCATAAAGGGTTGCAAGAAAATCATTATAACCAATATTCACGAAGAAGTACAGAATCTTGATGTCATGAATGATGATAATTTGCCACCAGTTCTTGGGCTTAGGAACTACATTTCTAGGTGCAGTATGCCTTTTGAGAAGCAAATGACAAAAAGCGATTTGAGGGTAGATCAAAATAGATTGTTGCTGAACAAGAATCATGTGCAAACATCTTTCTTGCCCTTGTTGAGAGAAGATGAAAACATTAAGGAAGGGATAGCAGTCATTGCCTATAATATGGATGGCAATGTGTTTACCATGACATTCAAGATTTGGGCAGAGAAGTACTATGTGCTTATGGGAGGGTGGAAAGCTTTCTTCCAAGCACATACATTGCAAATTGAAGATTATCTCAAAGTGTGGATGTTTCGTCATTCGGAAACCAACAAGCTATGTTTTGCTCTTAGTATCAGAAAGGTTTAA 699 0.3777 MSQKNSWNKRKTCSHIGYEDFTEEEYEVCKALLSLKGDTQDQEEHEDFPAEEYKVTEALLSLKRSQEKKKHKLNEADQDAIKGCKKIIITNIHEEVQNLDVMNDDNLPPVLGLRNYISRCSMPFEKQMTKSDLRVDQNRLLLNKNHVQTSFLPLLREDENIKEGIAVIAYNMDGNVFTMTFKIWAEKYYVLMGGWKAFFQAHTLQIEDYLKVWMFRHSETNKLCFALSIRKV. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07276 232 SUPERFAMILY DNA-binding pseudobarrel domain 124 226 IPR015300 -
Seca3g07276 232 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 49 228 IPR005508 GO:0003677
Seca3g07276 232 Gene3D - 115 231 IPR015300 -
Seca3g07276 232 Pfam B3 DNA binding domain 124 222 IPR003340 GO:0003677
Seca3g07276 232 CDD B3_DNA 124 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07276 Seca-Chr3 172681580 172682278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07276 65 227 B3 DNA Binding Superfamily AT4G03170 35.838 9.48e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g07276 B3 1.7e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07276 - - tpra:123915381 164.081