Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07271 ATGTATGGGAGAAAAGCTTGCCAACTTGTGAAAGAATTTGCAAGCGGAGAGAAGGGCCAGCTTGCACCATTTAATAGTGACTTGTTTGAACAAGTAGTTGCAGAATGCAGTCAACATCACCTTGAGCTTCAGTCCTTGATAAGGAAGATACAGGAGGAAGGTTTGGATGTCCAAACGGCTAGAAATGCAGATCACTATGGAGCCCTCATCCACCATCTTTCATTAGTCCGAAATAAACGTTGCCTAATGGCCTATATGTATAATCGAGCAGAAATTATACGGAGCTTGTTATGGAAGATAGGGCATGTGCTTCCTCAAGAAATTGAAGAGAAGCTTTGTCATTCAGAGGAAGAGTATTTCAAGAAGCATTCTGCAGCATTGAAATCTTATATGTCAAAACTTCTGGTTGATCTGACTGTGGATATGGTACCACCAAAAGATCCTTACATCCAAGTAAGGGTCCTTGAAGACATAGGAGAAGGCATTGTACTCAGTGATGATAAGACTGCCAATTTTGCCCGCCATTCAATGCACTTTCTGAAACGAACTGATGCGGAGCAATTTATCGCACGAGTAAAGTTGTCTTTGTGGCTTATAATTTATATTCCCCATTAG 615 0.4114 MYGRKACQLVKEFASGEKGQLAPFNSDLFEQVVAECSQHHLELQSLIRKIQEEGLDVQTARNADHYGALIHHLSLVRNKRCLMAYMYNRAEIIRSLLWKIGHVLPQEIEEKLCHSEEEYFKKHSAALKSYMSKLLVDLTVDMVPPKDPYIQVRVLEDIGEGIVLSDDKTANFARHSMHFLKRTDAEQFIARVKLSLWLIIYIPH. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07271 204 Gene3D - 1 134 - -
Seca3g07271 204 CDD GINS_B_Psf1 148 191 - -
Seca3g07271 204 SUPERFAMILY GINS helical bundle-like 1 146 IPR036224 -
Seca3g07271 204 FunFam DNA replication complex GINS protein PSF1 1 134 - -
Seca3g07271 204 PANTHER PARTNER OF SLD5 1 194 IPR005339 GO:0000811|GO:0006260
Seca3g07271 204 Pfam GINS complex protein 31 116 IPR021151 -
Seca3g07271 204 CDD GINS_A_psf1 3 134 IPR005339 GO:0000811|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07271 Seca-Chr3 172567601 172570761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07271 1 194 Core DNA Replication Machinery Family AT1G80190 70.051 1.34e-102 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07271 K10732 - qsu:112021696 338.961