Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07261 ATGGAGCTTGATTTGAATCAGGAGCCTTTGGACCCAACCCGTAGTTCAGTAATTGAACTTGATTCTATATTGAATGAACTAGAATCTGCCCAGGCACATATACAGGACCGTATTAGACACCTTGAAGCAGTAACTTCCAGAGCTAGGCAGCGTCACAGGTGGCCACCGGTTCACTCTCCGATTCAGATAACCAACTTTACTGGAGAAACCACGGCAAATGATGCTCAAGGTGAAGAAAGGGAGCACCAGGAAGATGGGGAAGGGATAGTTGAAAGTGGGAAAGAGGGCAAAAGGAAAGGTGGTGCCTGTTTAATAGCTAGAGCTTTAGGGATGAAAGAAACATATGCTACTATGCCAGGGGTGAGAACTGGAAATTTTTTTGATTGTAATATATGCTTGGAAATGGCAAGAGATCCTGTTTTGACATGCTGTGGTCACTTGTTTTGTTGGTCATGCTTCTATCAGTTGTCATATACTTATTCAAATGCAAAGGAATGCCCTGTTTGTCATGGAGAGGTAACTGAAAAGGGCATTATTCCAATTTATGGCAATGCAAGGGCAAGTGATGATTGTCAGTTGGATTTGAAAGAAACTGGTTTGAGTGTTCCTCCTCGACCTCAGGCATCCAGAATTGAGAGTGTTAGGCAGCGGCTAATAACCCAAGGAGCATCTTCTTCTGTAGTTGAAAACATTCGGCGGTTTAGTAACCTTATTGGTGGACTAGGAGAGCGAGTTCAATCAGAAAGCTCCAATGCTGCAACTGTTAGAAATAATAGTTTTCTCATTCATTCTCATCCACAGTCAGACAACCATCAACATACTGGTTCTCCTCCACTTTCAAGGTTTTTAGAGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAATGGATTCTGCAGAGAGATTAGTTCAGGACCTTGAATCATATATACATGACCGCCGCATAGGAGGAAGCAGGCAGTTAATTCCCCATGATGTTATTAGAAATTCAACTTTTAGTGTTGCTGGGACAAGCTGGTCAGCGAGTCTTACTACAGATATTGCTGCAACCAATTCTGCAGCTGCAGCTTCTTTGTCTCCGATAAGTAGGAATGTTAACACAGTTGCTGTTACAGGCTCAGAAGCCCAGACAACAGATAGTAATGTACAGATTAGTCCAATAGACCCTTCTTCATCTTACAGTAGAAGAAGAACTAATATTTCAAGACAAGATTCAAATGGGCGAAGAAGAAGATTGAGATGA 1257 0.4216 MELDLNQEPLDPTRSSVIELDSILNELESAQAHIQDRIRHLEAVTSRARQRHRWPPVHSPIQITNFTGETTANDAQGEEREHQEDGEGIVESGKEGKRKGGACLIARALGMKETYATMPGVRTGNFFDCNICLEMARDPVLTCCGHLFCWSCFYQLSYTYSNAKECPVCHGEVTEKGIIPIYGNARASDDCQLDLKETGLSVPPRPQASRIESVRQRLITQGASSSVVENIRRFSNLIGGLGERVQSESSNAATVRNNSFLIHSHPQSDNHQHTGSPPLSRFLEQGAASFSSLSSALNSAMDSAERLVQDLESYIHDRRIGGSRQLIPHDVIRNSTFSVAGTSWSASLTTDIAATNSAAAASLSPISRNVNTVAVTGSEAQTTDSNVQISPIDPSSSYSRRRTNISRQDSNGRRRRLR. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07261 418 ProSiteProfiles Zinc finger RING-type profile. 129 170 IPR001841 -
Seca3g07261 418 Pfam zinc-RING finger domain 129 170 IPR001841 -
Seca3g07261 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 213 IPR013083 -
Seca3g07261 418 MobiDBLite consensus disorder prediction 379 405 - -
Seca3g07261 418 MobiDBLite consensus disorder prediction 74 95 - -
Seca3g07261 418 CDD RING-HC_RNF5-like 127 169 - -
Seca3g07261 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 80 281 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca3g07261 418 SUPERFAMILY RING/U-box 124 178 - -
Seca3g07261 418 Coils Coil 24 44 - -
Seca3g07261 418 SMART ring_2 129 169 IPR001841 -
Seca3g07261 418 MobiDBLite consensus disorder prediction 379 418 - -
Seca3g07261 418 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07261 Seca-Chr3 172247104 172248985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07261 124 236 C3H Transcription Factor Family AT3G58030 52.174 2.40e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07261 - - cam:101488454 470.7