Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07254 ATGCCACTCATGGCTTTCAACGCTAAGCAAGAGGAAAAAGAACCGTACATAGTAAAAGAAGAGGAGGAAGACGATGATGACGAAGAAGAAGAAGAACAAGACTGGGGCGACTGGGAAGGAGAGGAGGGAGAGCCAGAATCGGAATTACTCTGTCTGTTCTGTGATTCCAACTACGGTTCATGCAGTTCCTTGTTCGACCATTGTGCTTCTATTCACCAATTTGATTTTCACGCCGTTAGGAGAGCTCTTAACTTGGATTTTTATGCCTCCTTCAAACTCATTAACTACATCCGCTCTCAGGTTGTAGAGAGCAGATGTTGGAGCTGTGGATTATCGTGTCAGTCCAACCATGACTTGCAGAATCATTTGCACGATGTAATTGACTTCAATGATATTAAGCCTCTGTGGGATGATGATAGATATCTAAAGCCTTTCATGCAAGATGATTCACTGTTGTACAGTTTTGGTGATTGCGAAGAAGGTGAAGATGAACAAATTTCACTGGTTGATGAAGATCTTATTAGGGATTTGAAGAGCACTGAAGAAATATACGGAAACGATCAAAAAGCTGTGGAAAAGTTGGTTGTTAATGATGATGTACATGATGTTTGTACAAGAAAGGAGACTGCTTCTGATGCGGGTGATCAGCCGAACTGGTCTAGTTCTTCAGATAAGGAACTCATTAATGGAAAAGGCTCAAGAGGATATGTTTCATCAAATGATAAAGATCCAGAAGAAGGGCACTCGATGGCTAATTCTCAAAGTCACATTGCAAAGCATATTAAGAAGGTTAATGAAAACTATTTTGGGTCTTACAGTTCATTTGGCATCCATCGAGAGATGTTAAGCGATAAGGTGAGAATGGATGCTTATGGCCAAGCAATCTTGAAGAATCCCTCTCTTCTAAATGGTGCTGTTGTTATGGATGTAGGTTGTGGAACTGGCATCCTCAGCCTATTTGCAGCTCAAGCAGGGGCTTTGAGGGTTATTGCAGTTGAGGCTAGTTCCAAGATGGCAGCAGTGGCATCTCAGGTAGTGAAAGATAATGGTCTCTGGCTAAGTAAAAGTCAAAGTGGAGTCAATGGCCTCCAAAATGGAGTCATAGAAGTGGTTCATGGCATGGTTGAAGAGATTGACAAAACTGTTGAACTTCAACCTCACAGTGTTGATGTATTGTTAAGTGAATGGATGGGATATTGCCTGCTGTATGAATCCATGCTTGGTTCAGTGCTTTATGCGCGAGACTTGTGGTTGAAGCCTGGAGGTGCCATTCTTCCTGACACAGCAACTATTTTTGTTGCAGGATTTGGAAAAGGAGGTACAAGTCTTCCATTTTGGGAGAATGTACATGATTTTGACATGTCTTGCATAGGGAAGGAGCTTGTCACAGATGCTGCCCAAATTCCTATAGTTGATGTTGTAGACCATCAAGATTTAGTTACCAATTCTGCGATTCTTCAGAACTTTGACTTGGCTACCATGAAGCCCAATGAAGTGGATTTCACTGCAACTGCTACTCTAGAACCAAAATTGAATGCTTCAGAAGAAAAAACACATTTGAATACTAAAACATGCTGCTGGTGTTATGGAGTTGTCCTATGGTTTGAAACTGGATTTACAAGTAGATTTTGCCGGGAAACACCAGCTGTGTTATCCACATCTCCTTACACTCCAAAGACACATTGGTCTCAAACAATCTTAACTTTTCGGGAACCCATTGCCATAGGATTTGCAAAAGAAATTGGAAAAGGAAAAGCGGAAGCAATTGGCACCGAAGCATACCCTGCTGTGAAGATTGATTTGCGTGTCAGCATTGTTCGGTCTACAGAGCATCGCAGCATTGACATTTCCTTAGAAGCTGCAGGCGTTGGTCCTGATGGTCGGAGATGCAGTTGGCCTGCACAGCTTTTTTCTCTGCAGTAG 1923 0.4223 MPLMAFNAKQEEKEPYIVKEEEEDDDDEEEEEQDWGDWEGEEGEPESELLCLFCDSNYGSCSSLFDHCASIHQFDFHAVRRALNLDFYASFKLINYIRSQVVESRCWSCGLSCQSNHDLQNHLHDVIDFNDIKPLWDDDRYLKPFMQDDSLLYSFGDCEEGEDEQISLVDEDLIRDLKSTEEIYGNDQKAVEKLVVNDDVHDVCTRKETASDAGDQPNWSSSSDKELINGKGSRGYVSSNDKDPEEGHSMANSQSHIAKHIKKVNENYFGSYSSFGIHREMLSDKVRMDAYGQAILKNPSLLNGAVVMDVGCGTGILSLFAAQAGALRVIAVEASSKMAAVASQVVKDNGLWLSKSQSGVNGLQNGVIEVVHGMVEEIDKTVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDLWLKPGGAILPDTATIFVAGFGKGGTSLPFWENVHDFDMSCIGKELVTDAAQIPIVDVVDHQDLVTNSAILQNFDLATMKPNEVDFTATATLEPKLNASEEKTHLNTKTCCWCYGVVLWFETGFTSRFCRETPAVLSTSPYTPKTHWSQTILTFREPIAIGFAKEIGKGKAEAIGTEAYPAVKIDLRVSIVRSTEHRSIDISLEAAGVGPDGRRCSWPAQLFSLQ. 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07254 640 MobiDBLite consensus disorder prediction 1 42 - -
Seca3g07254 640 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 271 575 IPR029063 -
Seca3g07254 640 MobiDBLite consensus disorder prediction 211 236 - -
Seca3g07254 640 Gene3D Vaccinia Virus protein VP39 257 426 IPR029063 -
Seca3g07254 640 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 265 592 IPR025799 GO:0016274|GO:0018216
Seca3g07254 640 MobiDBLite consensus disorder prediction 17 42 - -
Seca3g07254 640 CDD AdoMet_MTases 307 425 - -
Seca3g07254 640 Pfam C2H2 type zinc-finger (2 copies) 51 125 IPR041661 -
Seca3g07254 640 Gene3D - 429 629 - -
Seca3g07254 640 FunFam Protein arginine N-methyltransferase 6 261 426 - -
Seca3g07254 640 MobiDBLite consensus disorder prediction 207 255 - -
Seca3g07254 640 Pfam Methyltransferase domain 307 422 IPR041698 -
Seca3g07254 640 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 52 621 IPR025799 GO:0016274|GO:0018216
Seca3g07254 640 SUPERFAMILY beta-beta-alpha zinc fingers 30 164 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07254 Seca-Chr3 172089393 172093405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07254 23 639 C2H2 Transcription Factor Family AT3G12270 55.063 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07254 K11436 - gmx:100781879 934.865