Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07252 ATGCCGAGCTTCGATTCACAATTACCAAATTCCAATGCATGCTATACAGAGGGAAGCTCAATTGATTCTTTTCGTGTGTCTGACTTTGATCAATCAGTTGGATATCGCTTAGAGGATGCTGCTGACTTGAGTGCAAACTCAGTTTTTAACTCCCTAACAGTAAGTAACCAAACAATTGCTCGTGGTCCTGTTCACATTGGTTCTTTTGACAAGTTTCCAACCTCACTTGATAAAAGCCTATTGACGAACCAAATAGAGCAACAGAGCTTGCAATTACAAAAGGTTCAATCATCAAATCTGGTCACCATATTAAGTGATAATACAGAAAATCAGGAAGAGTCTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGACGTTGACACTGATGATAAGAATCCGCGGTTTGAAAGAAGTCAGTCCCTTGCTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAAAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAAGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTTCAACAGTTGGAAAGTAGTCGTTTGAAGTTGACTCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAATCTTTATATCAAATGCAGGTGATCAAGCACATTCCATGAGTGGAAATGGGGCCATGGCATTTGATGCAGAATATGCAAGGTGGCTAGAAGAGCAGAATCGGCAAATTAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGATACAGAACTCCGCATGATTATTGATGGTGTATTGGCACATTATGATGAGATATTTAGGCTGAAGGGCATTGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCTGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGATCATCTGAACTCCTCAAGCTCCTGGTAAATCAATTGGAACCTCTCACAGAGCAGCAGCTAGTGGGTATTACCAATTTACAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGAATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTGTCCACTGGATCACTGGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCAATGGGTAAGCTAGGAACACTTGAGGGGTTTATTCGGCAGGCTGACAATTTGCGCCAGCAAACGCTGCAACAAATTCACCGTATATTGACAACTCGCCAATCGGCTCGGGCACTCCTGGCAATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCGCTTTGGCTTGCTCGCCCAAGAGATTGA 1344 0.4435 MPSFDSQLPNSNACYTEGSSIDSFRVSDFDQSVGYRLEDAADLSANSVFNSLTVSNQTIARGPVHIGSFDKFPTSLDKSLLTNQIEQQSLQLQKVQSSNLVTILSDNTENQEESAMADASPRTDISTDVDTDDKNPRFERSQSLAAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNAGDQAHSMSGNGAMAFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIIDGVLAHYDEIFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07252 447 Coils Coil 181 208 - -
Seca3g07252 447 Coils Coil 238 258 - -
Seca3g07252 447 MobiDBLite consensus disorder prediction 125 139 - -
Seca3g07252 447 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 160 204 IPR004827 GO:0003700|GO:0006355
Seca3g07252 447 ProSiteProfiles DOG1 domain profile. 227 444 IPR025422 GO:0006351|GO:0043565
Seca3g07252 447 Gene3D - 161 213 - -
Seca3g07252 447 PANTHER TRANSCRIPTION FACTOR TGA9 95 446 - -
Seca3g07252 447 MobiDBLite consensus disorder prediction 108 164 - -
Seca3g07252 447 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 165 180 IPR004827 GO:0003700|GO:0006355
Seca3g07252 447 Pfam bZIP transcription factor 162 202 IPR004827 GO:0003700|GO:0006355
Seca3g07252 447 SUPERFAMILY Leucine zipper domain 162 205 IPR046347 GO:0003700|GO:0006355
Seca3g07252 447 FunFam BZIP family transcription factor 161 210 - -
Seca3g07252 447 Pfam Seed dormancy control 244 319 IPR025422 GO:0006351|GO:0043565
Seca3g07252 447 SMART brlzneu 158 221 IPR004827 GO:0003700|GO:0006355
Seca3g07252 447 CDD bZIP_HBP1b-like 162 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07252 Seca-Chr3 172018117 172028749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07252 116 447 bZIP Transcription Factor Family AT3G12250 79.217 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g07252 DOG1 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07252 K14431 - gmx:100816123 705.671