Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07248 ATGGCTATGGCATTTGTGGGAGAGGCATTCCTTTCAGCTTCTGTTGAAGTGTTGTTAGAGAGAATAATTTCCCATGAGTTCCTAGACTTTTTTCATAGAAAGGAGCGTGATGTTTCACTCCTCAGAAAGCTGAAAATAACACTGCTGAGTCTTCAAGCTGTATTGAATGATGCTGAGGAGAAACAAATCACCAACCCTGCTGTCAAGGAATGGCTGGATGAGCTCAGAGATGCTCTCTATGATGCTGATGATTTGTTGGATGAAATCAACTCTGAGGCTTTGAGATGCAAACTTGAAGCTGGGTCTCAAAGTCAACCCATTAATGACCAGGTTCTGAACTTCCTTTCCTCTCCTTTCAAACGGTTTTCTGGGGCCATTAATCCTGAAATACAATCACTTTTTCAAAGATTAGAGCAATTTTTAGTCCAAAAAGACATCCTTGGACTGAAAGAAGGTGCTTCCGGCCGAGTTTGGCATGGAACACCCACTAGTTCTGTGGTAGATGAATCTGCTATTTATGGTAGAGATGATGACAAAAAGATACTTAAAGATTACTTGTTGTCACAAGATGATGGTGGTAGTGGCAGTAAAATTGGAGTTGTTACCATTGTGGGCATGGGTGGACTTGGTAAAACAACCCTTGCTAAACTCCTTTACAATGATCATGAAGTGAAAGAGAAATTTGATTTGAAAGCGTGGGCATTTATTTCAAAGGATTTTGATGTTTCCAGGGTGACTAAAAGCCTTCTTGAATCTGTCAGTTCAAAGCCAATTGTTACTAATAACTTGAATACTCTACAAGTGGAATTGCATCAAAGCTTAAGCAATAAGAGATTTTTGCTTGTTTTGGATGACATATGGGATGGGAGCTATGATGATTGGAACAAACTGAAGGCCATTTTTAGAGCTGGGGAGATGGGAAGTAAGATCATCATCACAACTCGGGATGAAAGTGTAGCATTAGCCATGCAAACCTATCTTCCTATCCACTATTTGAGATCTCTTCAAAGTGAAGATTGCTGGTCTTTACTTGCCCATGCATTTGGACCAAATAACTGCTGGAAACAATCCAAACTAGGAGTAATTGGCAAAGAAATTGCAAAAAGATGTGGTGGCTTACCATTAGCTGCAGAAGCCCTTGGGGGTCTTCTCCGCACCAAATTATTGGAAAAGGAATGGAATAAGGTATTGAAAAGTAACATCTGGGATTTGCCAAATGTTAAGGTACTACCAGCTCTGCTATTGAGCTATCACTATCTTCCTGCTCCTTTAAAACGATGCTTTGCTTATTGTTCAATTTTTCCAAAGAACTCTAGTGTAGATAAGAAGATGGTGGTTTTGCTATGGATTGCAGAAGGCTTAGTACATCAGTCCAGAAGTGACAAAACTATGGAAGAAGTGGGTGAAGAATACTTTGATGAATTAGTATCTCGGTCACTAATACGTCGACAGACTGTCAATGACAAAGAAAGCTTTATGATGCATGACCTCATCAATGAATTAGCCACAATTGTTTCATCTGCATATTGTATAAGGAACGAGGATCCAAAGCCACATGAAAGTCTTGAAAGAGCTCGTCATTTGTCATACAACAGAGGGAAGTATGACTGCTTCAATAAATTTAATACGTTTTATGGATCAAAGTGTCTTCGTACTTTTCTAGCCTTACCATTAAGACATTGGTGGTCATCAAAATATCCTAATTTGAGAAGCCATTACCTATCAAGCAAGTTATTATTTGACTTGTTGCCAGCAATGAGACGGTTGAGGGTGTTATCTTTGTCACACTATAATAATATCACTGAGTTGCCTAACTCTCTTGGAAATTTAATACATCTGCGATACTTAGATCTCTCTAACACTAAAATTGAAAGATTGTCAGATGTAATATGCAAGCTCTACAATCTGCAGACCCTGTTGTTGTCCAAATGTTGCTCACTCACTGAGTTACCTGAGGACATTGGAAACTTGGTTAATCTACGCCACCTTGATGTCAGTGATACTAAATTGAAGGAGATGCCTATACAAATAGCCAAACTTCAAAATCTTCAAACTCTGTCCACCTTTGTTGTCAGCAAACAGCAAGATGGATTGAAGGTTGGAGAACTGAGAAAATTCCCCCATTTACAAGGGAAACTTTCAATCTTAAAGTTACAAAATGTTACTGATCCGTCTGATGCCTTTCAAGCCAACTTGAAGAAGAAAGAACAAATTGATGAGTTGACATTAGAATGGGATTGCAATGTTACTGAAGACTCACAAATGGAAAGGCTTGTACTTGAACAGCTGCAGCCCTCAACAAATTTGAAGAAACTCACCATTCATTTCTATGGTGGAACCACCTTTCCAAACTGGTTAGGAGATCCTTCATTTGGCAACATGATGTGTTTGCGCATCAGTGGCTGTGATCATTGTTGGTCGCTGCCTCCCCTAGGACAGTTACTTTGCCTCAAAGAACTCATCATTTCTGGACTTAAATCAATAAAGACAGTTGGTTTTGAATTCTATGGAAGTAGTTCCCCTTCTTTTCAGCCATTTCCCTCCTTGGAGATTCTGAGCTTTGAGGAGATGCCGGAGTGGGAGGAATGGGAGTTGATTGGAGGTACAGCTATAGAATTTCCTAGTCTAAGGCGTTTGTTTCTATGTGATTGTCCCAAACTCAAAGGAAACATACCAAAAAACCTTCCTTCCTTAGTTGAACTTGAGTTGTCCCAATGTCCTCTACTTGAGTCACAACATCCATATGAGGTGGATAACAGCAACATTGGAAGGCCATCACATCTTGGGTGGATGATGCTTGGCCTTAATTCTCTTAGAGAGTTGACTATATCTGGCATTCCCTCTCTGACATACTTCCCAATAGATGTTCTGCCCACAACATTACAATCTCTTACTTTCCTTTCTTGTGAGAATCTGGAATTTTTACCTCATGGATCCTTGCCGAGTTACACGTCACTTGAGAAATTGCAAATATTCAATAGCTGTAATTCAATGACATCCTTTCAGTTAGGCTGTCTGCCTGTGCTCAAAAGTCTCTTCATCTTGGGTTGTAAAAATCTGAAATCTATTTCTGTTGCAGAAGATGCATCCCAGGGTCTCTCTTTTCTTCAAAGTTTATCCATATATGCTTGTCCTAATCTGGAGTCATTTCCACTAGGTGGACTGGCCACTCCTAACCTCAACCATTTCTTGGTGTCAAGTTGTCGCAAGCTTAAGTCACTACCAGAACCAATTAACACATTATCTGGCCTTTATCAATTGAGTATTTATGGGCTTCCAAATCTGCATGCTTTTGCACAAGACAGTTTACCTGTGAATTTAAGGATACTTGAAGTTTCCAAATGTGGGAGTTTGTCTGCTACAGCTATCACTAAGTGGGGTTTGCAATGGCTTACTTGTCTTGCAGAGTTGCGAATTCGTGGTGATGGTCTTGTGGATGCACTGATGAAAATGGAAGTGTCTTTGCTTCCCACTTCTCTTGTGTCCCTACGCATCTCTCATCTTTACTACTTAAAATGCTTGGAAGGGAAGTGGCTTCAGCATCTCACCTCTCTTGAAAACCTTGAGATTTCAGATTGTCGCCGACTTGAATCCTTACCAGAAGAGGGACTGCCTTCCTCTCTTTCAGTACTGACTATCAAGCGCTGCCAGTTGTTAGAAGCAAGTTGCCAGAGCAATGGAGGGAAAGAGTGGCCTAAGATTGCTCACATTTCATGCATAATCATCAATAACAAAGTGATAATATGA 3747 0.4017 MAMAFVGEAFLSASVEVLLERIISHEFLDFFHRKERDVSLLRKLKITLLSLQAVLNDAEEKQITNPAVKEWLDELRDALYDADDLLDEINSEALRCKLEAGSQSQPINDQVLNFLSSPFKRFSGAINPEIQSLFQRLEQFLVQKDILGLKEGASGRVWHGTPTSSVVDESAIYGRDDDKKILKDYLLSQDDGGSGSKIGVVTIVGMGGLGKTTLAKLLYNDHEVKEKFDLKAWAFISKDFDVSRVTKSLLESVSSKPIVTNNLNTLQVELHQSLSNKRFLLVLDDIWDGSYDDWNKLKAIFRAGEMGSKIIITTRDESVALAMQTYLPIHYLRSLQSEDCWSLLAHAFGPNNCWKQSKLGVIGKEIAKRCGGLPLAAEALGGLLRTKLLEKEWNKVLKSNIWDLPNVKVLPALLLSYHYLPAPLKRCFAYCSIFPKNSSVDKKMVVLLWIAEGLVHQSRSDKTMEEVGEEYFDELVSRSLIRRQTVNDKESFMMHDLINELATIVSSAYCIRNEDPKPHESLERARHLSYNRGKYDCFNKFNTFYGSKCLRTFLALPLRHWWSSKYPNLRSHYLSSKLLFDLLPAMRRLRVLSLSHYNNITELPNSLGNLIHLRYLDLSNTKIERLSDVICKLYNLQTLLLSKCCSLTELPEDIGNLVNLRHLDVSDTKLKEMPIQIAKLQNLQTLSTFVVSKQQDGLKVGELRKFPHLQGKLSILKLQNVTDPSDAFQANLKKKEQIDELTLEWDCNVTEDSQMERLVLEQLQPSTNLKKLTIHFYGGTTFPNWLGDPSFGNMMCLRISGCDHCWSLPPLGQLLCLKELIISGLKSIKTVGFEFYGSSSPSFQPFPSLEILSFEEMPEWEEWELIGGTAIEFPSLRRLFLCDCPKLKGNIPKNLPSLVELELSQCPLLESQHPYEVDNSNIGRPSHLGWMMLGLNSLRELTISGIPSLTYFPIDVLPTTLQSLTFLSCENLEFLPHGSLPSYTSLEKLQIFNSCNSMTSFQLGCLPVLKSLFILGCKNLKSISVAEDASQGLSFLQSLSIYACPNLESFPLGGLATPNLNHFLVSSCRKLKSLPEPINTLSGLYQLSIYGLPNLHAFAQDSLPVNLRILEVSKCGSLSATAITKWGLQWLTCLAELRIRGDGLVDALMKMEVSLLPTSLVSLRISHLYYLKCLEGKWLQHLTSLENLEISDCRRLESLPEEGLPSSLSVLTIKRCQLLEASCQSNGGKEWPKIAHISCIIINNKVII. 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07248 1248 Pfam Leucine Rich repeats (2 copies) 588 628 IPR025875 -
Seca3g07248 1248 SUPERFAMILY L domain-like 554 992 - -
Seca3g07248 1248 ProSiteProfiles Leucine-rich repeat profile. 588 610 IPR001611 GO:0005515
Seca3g07248 1248 FunFam Probable disease resistance protein At1g61300 160 326 - -
Seca3g07248 1248 Gene3D Ribonuclease Inhibitor 550 919 IPR032675 -
Seca3g07248 1248 Pfam NB-ARC domain 197 398 IPR002182 GO:0043531
Seca3g07248 1248 PRINTS Disease resistance protein signature 893 909 - -
Seca3g07248 1248 PRINTS Disease resistance protein signature 273 287 - -
Seca3g07248 1248 PRINTS Disease resistance protein signature 370 384 - -
Seca3g07248 1248 PRINTS Disease resistance protein signature 200 215 - -
Seca3g07248 1248 Coils Coil 41 61 - -
Seca3g07248 1248 Coils Coil 72 92 - -
Seca3g07248 1248 ProSiteProfiles Leucine-rich repeat profile. 612 633 IPR001611 GO:0005515
Seca3g07248 1248 Pfam Rx N-terminal domain 10 103 IPR041118 -
Seca3g07248 1248 Gene3D - 334 415 IPR042197 -
Seca3g07248 1248 FunFam Probable disease resistance protein At1g63360 417 504 - -
Seca3g07248 1248 Gene3D - 159 327 IPR027417 -
Seca3g07248 1248 Gene3D Ribonuclease Inhibitor 1100 1239 IPR032675 -
Seca3g07248 1248 Gene3D Ribonuclease Inhibitor 920 1085 IPR032675 -
Seca3g07248 1248 SMART LRR_typ_2 586 609 IPR003591 -
Seca3g07248 1248 SMART LRR_typ_2 610 633 IPR003591 -
Seca3g07248 1248 SMART LRR_typ_2 657 680 IPR003591 -
Seca3g07248 1248 SUPERFAMILY L domain-like 934 1235 - -
Seca3g07248 1248 PANTHER DISEASE RESISTANCE PROTEIN RP 34 906 IPR044974 GO:0006952
Seca3g07248 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 431 IPR027417 -
Seca3g07248 1248 Gene3D - 416 503 IPR036388 -
Seca3g07248 1248 Gene3D - 33 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07248 Seca-Chr3 171639005 171642751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07248 198 833 WRKY Transcription Factor Family AT5G45050 24.030 3.61e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07248 - - mtr:25480434 1611.28