Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07237 ATGTTTGGACTTGATGGATCAGTACCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAGTCACGCTCCGTTCAAAATGAGAGGCCATATGTGTGTACTGTCAATGATTGTCAGTCAAGTTACAGAAGAAAGGACCACCTGACTCGTCACCTTCTACTGCATCAAGGGAAGACTTTCACATGTCCTGTTGAGAATTGCAACCTTGAATTCTCTCTCCAAAGCAATTTGAAAAGACATGTTAACGTGTTCCATGATGAAAATTCTACCCCTAGTATTGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAATCGGCTGTGGAAAGGTTTTCAGATTTGCATCAAAGCTACAAAAGCATGAAGATTTTCATAGTAAAAATCGTCAACTACTGCATCAAGGGAAGACTCTCACATGTCCTGTTGAGAATTACAACCTTGAATTCTCTCTCCAAAGCAATTTGAAAAGACATGTTAACGAGTTCCATGATGAAAATTCTAACCCTAGTAATGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAATCGGCTGTGGAAAGGTTTTCAGATTTGCATCAAAGCTACAAAAGCATGAAGATTCTCATGTTAAGCTAGAATCAGTAGATGTAGTTTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGTGCCTTAGAGCCCATGTTAACTCCTGCCATCAATATGTGACCTGTGATACATGCGGGACTAAGCAACTGAAGAAGAATATTAAACGGCACCTCCGCACACATGAAGCTGGCAGTTCATCAGAGGCATTTCAATGTGAATTTAAGGGTTGTGGCTGCACATTCTCAAGTAAATCTAATCTTCATAAACATGAGAAGGCTGTGCACTTCAAAGAAAAACCTTTTGTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACACGTGAGAGATAAACACGAAAAAACTGGCATACATGTTTTTACCCTTGGTGATTTTGAAGAAGCCGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGAAGAAGAGAACGTGTCCTACTGTTGAAATGTTAGTTAGGAAGAGAGTTACACCACCTAGTCAATTGGAGAACTGGTTGCTCATGCAGGATAGTGACTAA 1140 0.414 MFGLDGSVPGRETSCEAPSRMPQSRSVQNERPYVCTVNDCQSSYRRKDHLTRHLLLHQGKTFTCPVENCNLEFSLQSNLKRHVNVFHDENSTPSIVESQKQYVCPEIGCGKVFRFASKLQKHEDFHSKNRQLLHQGKTLTCPVENYNLEFSLQSNLKRHVNEFHDENSNPSNVESQKQYVCPEIGCGKVFRFASKLQKHEDSHVKLESVDVVCLEPGCMKHFTNAQCLRAHVNSCHQYVTCDTCGTKQLKKNIKRHLRTHEAGSSSEAFQCEFKGCGCTFSSKSNLHKHEKAVHFKEKPFVCGFPDCGMRFAYKHVRDKHEKTGIHVFTLGDFEEADEQFRSRPRGGKKRTCPTVEMLVRKRVTPPSQLENWLLMQDSD. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07237 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 208 IPR013087 -
Seca3g07237 379 SUPERFAMILY beta-beta-alpha zinc fingers 60 88 IPR036236 -
Seca3g07237 379 Gene3D Classic Zinc Finger 22 59 - -
Seca3g07237 379 SUPERFAMILY beta-beta-alpha zinc fingers 250 308 IPR036236 -
Seca3g07237 379 PANTHER ZINC FINGER PROTEIN 129 369 - -
Seca3g07237 379 SUPERFAMILY beta-beta-alpha zinc fingers 27 59 IPR036236 -
Seca3g07237 379 Gene3D Classic Zinc Finger 60 88 - -
Seca3g07237 379 SUPERFAMILY beta-beta-alpha zinc fingers 176 203 IPR036236 -
Seca3g07237 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 299 IPR013087 -
Seca3g07237 379 Gene3D Classic Zinc Finger 298 323 - -
Seca3g07237 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 131 IPR013087 -
Seca3g07237 379 SMART c2h2final6 179 203 IPR013087 -
Seca3g07237 379 SMART c2h2final6 239 260 IPR013087 -
Seca3g07237 379 SMART c2h2final6 62 87 IPR013087 -
Seca3g07237 379 SMART c2h2final6 300 326 IPR013087 -
Seca3g07237 379 SMART c2h2final6 139 164 IPR013087 -
Seca3g07237 379 SMART c2h2final6 269 294 IPR013087 -
Seca3g07237 379 SMART c2h2final6 211 236 IPR013087 -
Seca3g07237 379 SMART c2h2final6 102 126 IPR013087 -
Seca3g07237 379 SMART c2h2final6 33 57 IPR013087 -
Seca3g07237 379 ProSitePatterns Zinc finger C2H2 type domain signature. 35 57 IPR013087 -
Seca3g07237 379 Gene3D Classic Zinc Finger 242 297 - -
Seca3g07237 379 MobiDBLite consensus disorder prediction 1 28 - -
Seca3g07237 379 ProSitePatterns Zinc finger C2H2 type domain signature. 271 294 IPR013087 -
Seca3g07237 379 Pfam Zinc finger, C2H2 type 102 124 IPR013087 -
Seca3g07237 379 Pfam Zinc finger, C2H2 type 269 294 IPR013087 -
Seca3g07237 379 Pfam Zinc finger, C2H2 type 33 57 IPR013087 -
Seca3g07237 379 Pfam Zinc finger, C2H2 type 179 203 IPR013087 -
Seca3g07237 379 Pfam Zinc finger, C2H2 type 62 87 IPR013087 -
Seca3g07237 379 SUPERFAMILY beta-beta-alpha zinc fingers 99 130 IPR036236 -
Seca3g07237 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 92 IPR013087 -
Seca3g07237 379 ProSitePatterns Zinc finger C2H2 type domain signature. 64 87 IPR013087 -
Seca3g07237 379 ProSitePatterns Zinc finger C2H2 type domain signature. 181 203 IPR013087 -
Seca3g07237 379 Gene3D Classic Zinc Finger 89 167 - -
Seca3g07237 379 Gene3D Classic Zinc Finger 168 239 - -
Seca3g07237 379 ProSitePatterns Zinc finger C2H2 type domain signature. 213 236 IPR013087 -
Seca3g07237 379 ProSitePatterns Zinc finger C2H2 type domain signature. 302 326 IPR013087 -
Seca3g07237 379 ProSitePatterns Zinc finger C2H2 type domain signature. 104 126 IPR013087 -
Seca3g07237 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07237 Seca-Chr3 171364615 171368361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07237 99 329 C2H2 Transcription Factor Family AT1G72050 44.876 2.84e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g07237 zf-C2H2 0.0019 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07237 K09191 - gmx:100801812 434.106