Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07234 ATGGAGGAGAAAGCAGAGAACCAAGATCATAACCACCCATCTCTCCTCCCTAATCATAACACCACCAAGGAAGACTCACCAAGAAAACCCATTATTGGTGGTAGTAGTGATAGGCTGAAGAGGGATGAGTGGAGTGAAGGAGCTGTGTCTACCCTTCTTGAGGCCTATGAAGCAAAGTGGGTGCTTAGAAACAGAGCAAAACTCAAAGGCCATGATTGGGAAGATGTTGCAAAATATGTTTCATCAAGAGCAAACTCCACCAAATCACCAAAGACACAAACACAGTGCAAGAACAAGATAGAGTCCATGAAGAAAAGGTACAGATCAGAGTCAGCAACTGCAGATGCATCATCTTGGCCTTTATATTCTCGTCTTGATCTTCTTCTCCGTGGGACAGGACCAATATCCACTCTGCCACCACAACCACCACCAACTTCTCAATCACCACACCTTAGCAATAACCAAGCCTTGATTTTGTTAGAGCCATCACTTGCAGTGTCACAAGTTCCCCATCAACCTCCTCCTCCATTTCCTCCTCCACCACTTCCAACTGAACAAAACTCACATGGATCCAATGGTGTTGATAGATTAGCCAAGGAGGAAGGATTAGGAACTACAAAGTCTTCTGACCATGTGTCTAACAAGAATAATCCATTGGATACTGATAGCAGCACACCAGCTCTTTATAGTGAAAAGGACAAGGTAAGATGCAACAAGAGGAAGATGAAAATGGAGAACAATAACAACAACAACAAGAGGAGAAGGAATAAAGAAGAAGTGGATATAGCAGAGAGCATAAGGTGGCTAGCAGAAGTGGTGGTGAGGTCAGAACAAACAAGAATGGACACATTGAAAGAGATAGAGAAGATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAAATGGATCTCAAGAGAACTGAAATCATTGCCAATACTCAATTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCATCATTAAGAATTGGAAGAAGTTAA 1011 0.4253 MEEKAENQDHNHPSLLPNHNTTKEDSPRKPIIGGSSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKYVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATADASSWPLYSRLDLLLRGTGPISTLPPQPPPTSQSPHLSNNQALILLEPSLAVSQVPHQPPPPFPPPPLPTEQNSHGSNGVDRLAKEEGLGTTKSSDHVSNKNNPLDTDSSTPALYSEKDKVRCNKRKMKMENNNNNNKRRRNKEEVDIAESIRWLAEVVVRSEQTRMDTLKEIEKMRVEAEAKRGEMDLKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07234 336 Gene3D - 44 109 - -
Seca3g07234 336 FunFam Trihelix transcription factor ASIL2 44 109 - -
Seca3g07234 336 MobiDBLite consensus disorder prediction 1 43 - -
Seca3g07234 336 MobiDBLite consensus disorder prediction 168 185 - -
Seca3g07234 336 MobiDBLite consensus disorder prediction 22 43 - -
Seca3g07234 336 Pfam Myb/SANT-like DNA-binding domain 41 127 IPR044822 -
Seca3g07234 336 MobiDBLite consensus disorder prediction 207 226 - -
Seca3g07234 336 MobiDBLite consensus disorder prediction 227 257 - -
Seca3g07234 336 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 24 322 IPR044823 -
Seca3g07234 336 MobiDBLite consensus disorder prediction 167 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07234 Seca-Chr3 171183135 171185311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07234 14 319 Trihelix Transcription Factor Family AT3G14180 24.451 1.05e-17 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca3g07234 Myb_DNA-bind_4 4.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07234 - - gmx:100799917 457.988