Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07232 ATGGACACCAAACTCCTAACAATTCGCACCCTCCTCTCCAATCTCAACTCCCTCTCCGACCAAACCCGCCTCGCCGCCCTCCGTCACCTCCACCTCATGTCCAACCAAGACCCCGCCTCCCGTCCCCTCATCGCCGCCACAGACGCCGCCATCCCTCTCCTCTCCGACGCCCTCTACTCCACTTCCCACCCCATCCAAGACCACGCCTCCGCCACCCTCTTCAACCTCTCAATCTCCGTCCGCAACCCCCTCGTCTCCTCCGCCACCCTCCTCCCCGCCCTCTCCCACCTCCTCTCCCACCACGCTTCCTCCTCCTCCCCCTCCGCCGTCCAGTCCGCCGCCGCCACCCTCCACAGCCTCCTCACCACCGCCCCCGAGTTCCGCCCCCTCGTCGGCGCCAACCTCCACATCCTCCGCGCCCTCATCGAAATAATCAACAACACAGACTCGCCAACGAGGTCCGTGAAGGACGCACTCAAAGCCTCCTTCGCCGTAGCGCTTCACCCCCCGAACCGAACCGTTATGGTCCGGCTCGGCGCGGTTCCCGCGCTTTTCGGCCTCTTGGCAAATGCGAGGAAGAGAAAAACCGGTATAATTGAGGACGCTACGGCGGTGATTGCGCAGATCGCGGGGTGCGAGGAGAGCGAGGAAGCGTTTCGGAAGGTTTCAGGGATTTCGGTTTTGGTGGGTTTGTTAGGTTTCGTTTCTGGAAGCTGTGGTGGTGGTTTGAGGACCAGGGAGAATGCGGTTTCGGGGTTGTTGAATTTGGTGAGGTATGGAGGGGATAGAGTTGCTTTGGAGGTTAAAGAGAGAGGTGATGTGTTGGATGGGATTGTGTATGTGCAAGAACATGGTAGCACCAAAGGGAAGAGCAAAGCTGTGGCTTTGTTGAAGCTTTTGCTTGAAGGTGGAGGAAACAATGACAAAATTGTTGAAGATTTGTATCCTGTTGAGTCACACGTGTGA 966 0.5839 MDTKLLTIRTLLSNLNSLSDQTRLAALRHLHLMSNQDPASRPLIAATDAAIPLLSDALYSTSHPIQDHASATLFNLSISVRNPLVSSATLLPALSHLLSHHASSSSPSAVQSAAATLHSLLTTAPEFRPLVGANLHILRALIEIINNTDSPTRSVKDALKASFAVALHPPNRTVMVRLGAVPALFGLLANARKRKTGIIEDATAVIAQIAGCEESEEAFRKVSGISVLVGLLGFVSGSCGGGLRTRENAVSGLLNLVRYGGDRVALEVKERGDVLDGIVYVQEHGSTKGKSKAVALLKLLLEGGGNNDKIVEDLYPVESHV. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07232 321 PANTHER U BOX DOMAIN-CONTAINING 8 300 - -
Seca3g07232 321 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 179 224 IPR000225 GO:0005515
Seca3g07232 321 SMART arm_5 39 78 IPR000225 GO:0005515
Seca3g07232 321 SMART arm_5 79 122 IPR000225 GO:0005515
Seca3g07232 321 SMART arm_5 168 211 IPR000225 GO:0005515
Seca3g07232 321 SMART arm_5 212 258 IPR000225 GO:0005515
Seca3g07232 321 FunFam ARM repeat superfamily protein 2 305 - -
Seca3g07232 321 Gene3D - 3 312 IPR011989 -
Seca3g07232 321 SUPERFAMILY ARM repeat 7 314 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07232 Seca-Chr3 171141264 171142229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07232 8 300 U-box Gene Family AT1G23030 28.571 7.68e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07232 - - gmx:100803111 348.206