Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07222 ATGGAAGGCTCCACTCAAGAATCTGAACATAATAGTGGTCCATCATATGAAGACGGTAATAGTGGTTCATTTTCGCAAGAGGCTGAAGACAGTAATCGTGGATACCTGGTGAACCAAGGCGGCTGTGGTGTGTATTTGGTGGATGAAGAATTCGATGGAAACTGGAATGAAGGAGAAAATAATGAAGATGCTGATGAGGTTTCTAAAACTAGTATTGATGGTTTAGAAGATATCGAAGCTATTGATTTGCAGAAATTTAGCCCCCATCAGATAACTAATTTTGATTTCTGTAGTGTGGATGTTGCATACCAATTCTACTTTTGGTATGCTTGGGCTAACGGCTTTGCATCTCGACGGGGGAAGGTAATCTCGAGTAAGAAGACCGGTATGGTGTTGCAACAAAATTTCTTCTGTAATAGGGAAGGCATACGTCTAGAGGATGGTGTCCCATTGGAGGAAAAACAACGTGAGCCGAAAGCTGTAACTAGATGTGGGTGCCGAGCAGAATTTCGGGCACATGTTGACATAAATACAGGGCGCTGGTATTGTTCTTACTTTTATGATAAGCATAATCATGAGTTGCTGGATCCAATATTTTGTTCAATGTTACCGGCACACCGGAAGATGACCTCTAGTGATGTTAATCAGATGAACAATATGCTTAAAGTCGGCATTGGACCTCCTCAAATCTTTGAATCATTTGCTAATCAGTGTGGGGGTTATGAAAAGATAGGTTTCCGGAAGAAAGATATATATAACCAGATAAGTCAACAAAGGCGTATGCAACAGTCAGATGCCGCAGAAGCAGTAAAGTTTTTGCGTGGGTTGGGGCAAAATGACCAGTCCATGTTTTTTAGACATACGACCAGTGAGGACGGTAGGTTGGAGCACTTGATATGGTGTGATGGTGTAATGCAGCTGAATTACCAAGTGTTTGGGGAGGTGCTAGCATTCGATGCAACATATGGAAAGAACAAATACCGACTACCTCTTGTTGTTTTTTCTGGTGTAAATCATCATAACAGAACAACAATCTTTGCTGCTGCTGTAGTTGCTAATGAAACTGAAGAAACCTATACATGGTTGTTGCGTCAGTTTCTGGAAGCCATGAAAGGAAAAATGCCTTCCTCAATCATTACAGATGGAGACCTTGCAATGAAAAACGCAATTAAATCTGTGTTTCCACGTGCCCACCATCGGTTGTGTGCTTGGCATCTTACTAGGAATGCAACTGCCAACGTAGGAAAACCTGGTTTCACTGCTGACTTTGAGAGTTGTATGTTAGCAAACTATGAGGTTGGCATGTTTCAAAGAAAATGGAATGAATTGGTTGTTAAATATGGTGTTGAAGATAAACCATGGATTAGGGACATGTATGAGAAGAGGGATATGTGGGCCACCGCTTACATGAGGGGGAAATTTTTTGTTGGGTTTAGGACAACCTCTAGGTGTGAAGGTTTGCATTCCGAATTGTCAAAGTTTGTGCACTCAAAACATAATCTCACTGACTTCTTACAACATTTCTTTCAATGTGTTGATCATATGCGGTTTAAGGAGATTGAAGATGACTTTGCATCAATACATGGTGATCCAGTGCTTCAAACTAGTCTCCATGATCTTGAAGAGTCAGCTGCAAAGTTTTTAACTAGGGAGGTGTTTTTCCTATTTCGCCCTGTGCTTGAAAAGGCAGCCATGATGTCTGTGATTGGCTGTAAGGAGTTGTACTCTAGTTATGTGTACATAATTCGCAATCGCCGGGGTTTAGGGAAAGAATGGAGTGTCTCATATAATCCGTCATGTGGTGAATATAAATGCCAATGCATGTGGTTTGAATCACATGGACTACCATGTTCACATATAGTTGTTGTTTTGTGTCATCTGGACATCAAAGAGCTTCCTAATTCTGTTCTACTTCGCAGATGGACGAAGGGTGCAGAAGACATGGTGAATGTGAGTAGTGGTCAATCATCTGCTGGTTGGGATTCACAGAAAGTTTTTAGGGTTGAGGACTTAAATTTCCTGTATAGGAAATTATCAGTTGTAAATGGTGATACAGTTGAAGACTATTATGACACTCGTGAGAAACTACTGGAGGAATATGAAATGAAAAAGGCAAAGAAAGCACAACAAAGGGCTGCAGGTTCTGAACCAGTAGCTTCTGCTAATGAAGGTTTGAGAGATCCATTGCGTGCTAGAGAAAAGGGAACTAGTCAAGCAAGTATGTCAGCCGGTGGCTTAAGAGTTAAGCGGACAACAAAGTGCTCGTGGTGTAGGGTTGCAGGCCATAATCGAGTGACTTGTCCACTTCGAGCACAAAGTCAACAGATGAGCCAGGCAGAACCTCAAAGCTCAAGGTTTGATGATGAAGAAGGCAACTATTATAATTGTGGAACTATATAA 2400 0.4142 MEGSTQESEHNSGPSYEDGNSGSFSQEAEDSNRGYLVNQGGCGVYLVDEEFDGNWNEGENNEDADEVSKTSIDGLEDIEAIDLQKFSPHQITNFDFCSVDVAYQFYFWYAWANGFASRRGKVISSKKTGMVLQQNFFCNREGIRLEDGVPLEEKQREPKAVTRCGCRAEFRAHVDINTGRWYCSYFYDKHNHELLDPIFCSMLPAHRKMTSSDVNQMNNMLKVGIGPPQIFESFANQCGGYEKIGFRKKDIYNQISQQRRMQQSDAAEAVKFLRGLGQNDQSMFFRHTTSEDGRLEHLIWCDGVMQLNYQVFGEVLAFDATYGKNKYRLPLVVFSGVNHHNRTTIFAAAVVANETEETYTWLLRQFLEAMKGKMPSSIITDGDLAMKNAIKSVFPRAHHRLCAWHLTRNATANVGKPGFTADFESCMLANYEVGMFQRKWNELVVKYGVEDKPWIRDMYEKRDMWATAYMRGKFFVGFRTTSRCEGLHSELSKFVHSKHNLTDFLQHFFQCVDHMRFKEIEDDFASIHGDPVLQTSLHDLEESAAKFLTREVFFLFRPVLEKAAMMSVIGCKELYSSYVYIIRNRRGLGKEWSVSYNPSCGEYKCQCMWFESHGLPCSHIVVVLCHLDIKELPNSVLLRRWTKGAEDMVNVSSGQSSAGWDSQKVFRVEDLNFLYRKLSVVNGDTVEDYYDTREKLLEEYEMKKAKKAQQRAAGSEPVASANEGLRDPLRAREKGTSQASMSAGGLRVKRTTKCSWCRVAGHNRVTCPLRAQSQQMSQAEPQSSRFDDEEGNYYNCGTI. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07222 799 SMART 26again6 603 630 IPR006564 GO:0008270
Seca3g07222 799 Pfam FAR1 DNA-binding domain 104 195 IPR004330 -
Seca3g07222 799 MobiDBLite consensus disorder prediction 771 790 - -
Seca3g07222 799 Pfam MULE transposase domain 315 409 IPR018289 -
Seca3g07222 799 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 89 702 IPR031052 GO:0006355
Seca3g07222 799 ProSiteProfiles Zinc finger SWIM-type profile. 592 628 IPR007527 GO:0008270
Seca3g07222 799 MobiDBLite consensus disorder prediction 708 744 - -
Seca3g07222 799 Coils Coil 693 713 - -
Seca3g07222 799 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07222 Seca-Chr3 170990475 170994230 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g07222 MULE 5e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07222 - - tpra:123913749 749.199