Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07217 ATGGCGACCATTGTGGCAGAAGCACTCCTCTCAGCTTCTGTAGAGCTGTTGTTAGACAACATCGTTTCTGGTGAGTTTGTGAACTTCTTTCGGAGAAAGAAGCTTGATGTGTCACTCCTGGACAAGCTGCAAACAACTCTACTGACTCTTCAAGCTGTACTGAATGATGCTGAGGAGAAACAAATCACAAATCCTGCTGTCAAGGAATGGCTGGATAAGCTGAGAGATGTTGTCTTTGAAGCTGATGATCTGTTTGATGAAATCAACACCGAGGTATTGCGATGCAAAATGGAAGCCAAGTATCAAGGCCAAACTGTCAGTGCTAAGGTGTGGAACCTCCTTTCTTCTTGTTTCAAACAGCCTTATAGGATGATCAATTCTAAAATGCAAACATTATTTGGTTCTGTGGTAGATGAATCTGCTATTTGTGGTAGAGATAGTGACAAAATGGAACTTAAAATGATTTTGCTGTCAGATGATGCTAGTGATGGCTGCACAAAAATAGGAGTCATTTCCATTGTGGGCATGGGAGGGCTTGGTAAAACAACCCTTGCTAAACTCCTTTACCATGATCCTGATGTAAAAAAGAAATTTAATTTGAAAGCATGGGCACATATCTCAAAGGATTTTGATGTTTTCAGGGTCGTTAAAACCCTTCTTGAATTTGTCACTTCAGAAAAAACTAATACTGATGATAACTTGAATACTCTACAAGTGAAATTGCAGCAAAGTTTAAGCCATAAAAAATTTTTGCTTGTATTGGATGACATATGGGAAGGAAACTACGTTAATTGGAACAATCTAATGGACATCTTTAATGCTGGGGATATGGGAAGTAAGATCATTATCACAACACGACATGAAAGTGTTGCACTAGCCATGCAAACCTTTCTTCCTATCCACTATTTGACACCTTTGGAAAGTGAAGATTGTTGGTCTTTACTTGCCAAACATGCATTTGGACCAAGAAACTCCCAACAACGGTCCGAATTAGAAGTGATTGGCAAAGAAATAGCCAAAAGATGTGATGGTTTACCATTAGCTGCAGTAGCACTTGGGGGTCTTCTTCGCACCAAATTGTCACAAAATGATTGGAATAAGGTACTAAAAAGTAACATTTGGGATTTGCTAAATGTTGAGGTGCAACCAGCTCTGCTCTTGAGCTATCATTATCTTCCGGCTCCTTTAAAACGATGTTTTGCCTATTGTTCAATTTTTCCGAAGAATTCTGAGTTAGATAAAAGGACGGTAGTTCAGTTGTGGATTGCAGAAGGCTTGTTACATCATTCCAGAAGTCAGAAAAGTTGGGAAGAAGTAGGAGAAGAATACTTTGATGAACTAGTGTCAAGGTCGCTCATACTTCGACGGACTGTTGATGGGGAAGAAAGCTTTGTAATGCATGACCTCATCAATGATTTAGCTACAATGGTTTCATCTACATATTGTATCAGGTTGGATGAACAGAAGTCCCATGAAGGTCTTGAAAAAGTACGCCATTTGTCATATAATAGAGGGAGATATGACTCATACAATAAATTTGATAAATTGTTTGGATTAAAAGGTCTACGTACCTTCCTACCCTTACCATTAGAAAGACAGCAGTTGTTTAATTACCTATCAAGGAATGTAGTAAATGAGTTGTTGCCAACAATGAAACAGTTACGGGTGTTGTCTTTGTCAGACTATAAAATCACTGAGTTGCCCAACTCTATTGGAAATTTGATATACCTGCGATACTTAAATCTCTCTTTCACTCCGATTAAAAAGTTGCCTTCTGTGACATGCAAGCTTTACAATCTGCAGACGTTGTTATTGTCAGACTGTTGGAAACTCACTGAGTTGCCCGAGGACATGGGAGAATTGGTGAATCTACGCCACCTTGACATTAGTGGCACTGCATTGAAGGAGATGCCCACACAAATAATCAGATTACAAAATCTGCAAAGCTTGTCTAATTTTATTGTCAGCGAACAACATGATGGAGTGAAGGTTTCAGAGCTGGGAAAATTTCCTCATCTACAGGGGAAGCTTTCCATCTCACAGCTGCAAAATGTTGCCAACACCTCGGACGCTTCTCAAGCAAATTTGAAGATCAAAGAACAAATTGACGAGTTGGAACTAGCATGGGATGGGAATGATTCTGGTTTGCAAATTCAAAGTGTTGTACTTGAACAGTTGCAACCCTCAACAAATTTGAAGAATCTCACCATCAGTGGCTACGGTGGAACCAACTTTCCAAATTGGTTGGGTGATACTTTGTTTGGCAACATAGTGTCTTTGAGCATAATTACTTGTTATCATTGTTCATGGCTGCCACCCCTTGGACAATTACATAGCCTAAAAGAACTCTCTTTTACTGGGATGAAAGCCGTGAAGACTGTCGGTGCTGAATTCTATGGAAGTAATGCTCTTTCATTTCAACCATTTCCCTCCTTAGAGACTCTGAAATTTTGGGGTATGCCAGAGTGGGAGGAATGGAAGTTGATTGGAGGTACATCTACAGTGTTTCCTCGTCTAAGACATCTGTCACTGTCACATTGTCCGAAACTCAAAGGAAACTTGCCCACCAACCTTCCTTCCTTGACTGAACTTGTGTTAGAGAGATGTGATTGTCTAGAGGAGTCAGGGCATTCAGATGATAATGGTCTATTCCAATTGATGCTGCCTCTGCATGCTCTTCGGGAGTTAAGGATAAAAAGATGTCCCTCTTTGACTTCCTTCCCAAGAGATGGACTACCCAAAACCTTACAATCTCTCGATCTCTACTGTTGTCCGAATCTGGAATTCCTTCCTTGTGAATCCTTGCACAATTACACATCACTTGAGCATTTAAAAATAGTTATTAGCTGTATGTCAATGACATCCTTTACCTTGGGCTCTCTCCCTGTGCTCAGAAGTCTTGATCTCAGCTATTGTACAAATCTTAAATCAATTTTAATTGCCGAAGATGCATCTCAGAGTCTCTCCTTTCTTCAAAGCATTTGTATAGTTTCGTGTGATGAACTGGAGTCATTTTCCCCGGTTGGATTGCCCACTCCTAACCTCATTCATTTATCGGTGTCTTGGTGTAAGAAGCTTCATTCACTACCAGAACCAATGAACACTTTCCCTGACCTTCAAAAATTGGATATTGGTTACCTTCCAAATCTGCAATCTTTTGCCAAAGAGGGTTTGCCTATCAATTTAAGCCTTCATGATGACGATATCGTGAATGTACTGATGAAAATGGAAGTGCCATCTTCAATTGTGTCCCTATCCATCTATAGTCTTGATGATATAGAATGCTTGGATGGGAAGTGGCTTCACCATCTCACCTCTCTCCAAACACTTAGGATTTCATTCTGTGACAATCTCAAGTCATTGCCAAGAGGGATTGCCTTCCTCTCTCCAAACTCTGGAGATCATTAA 3408 0.4014 MATIVAEALLSASVELLLDNIVSGEFVNFFRRKKLDVSLLDKLQTTLLTLQAVLNDAEEKQITNPAVKEWLDKLRDVVFEADDLFDEINTEVLRCKMEAKYQGQTVSAKVWNLLSSCFKQPYRMINSKMQTLFGSVVDESAICGRDSDKMELKMILLSDDASDGCTKIGVISIVGMGGLGKTTLAKLLYHDPDVKKKFNLKAWAHISKDFDVFRVVKTLLEFVTSEKTNTDDNLNTLQVKLQQSLSHKKFLLVLDDIWEGNYVNWNNLMDIFNAGDMGSKIIITTRHESVALAMQTFLPIHYLTPLESEDCWSLLAKHAFGPRNSQQRSELEVIGKEIAKRCDGLPLAAVALGGLLRTKLSQNDWNKVLKSNIWDLLNVEVQPALLLSYHYLPAPLKRCFAYCSIFPKNSELDKRTVVQLWIAEGLLHHSRSQKSWEEVGEEYFDELVSRSLILRRTVDGEESFVMHDLINDLATMVSSTYCIRLDEQKSHEGLEKVRHLSYNRGRYDSYNKFDKLFGLKGLRTFLPLPLERQQLFNYLSRNVVNELLPTMKQLRVLSLSDYKITELPNSIGNLIYLRYLNLSFTPIKKLPSVTCKLYNLQTLLLSDCWKLTELPEDMGELVNLRHLDISGTALKEMPTQIIRLQNLQSLSNFIVSEQHDGVKVSELGKFPHLQGKLSISQLQNVANTSDASQANLKIKEQIDELELAWDGNDSGLQIQSVVLEQLQPSTNLKNLTISGYGGTNFPNWLGDTLFGNIVSLSIITCYHCSWLPPLGQLHSLKELSFTGMKAVKTVGAEFYGSNALSFQPFPSLETLKFWGMPEWEEWKLIGGTSTVFPRLRHLSLSHCPKLKGNLPTNLPSLTELVLERCDCLEESGHSDDNGLFQLMLPLHALRELRIKRCPSLTSFPRDGLPKTLQSLDLYCCPNLEFLPCESLHNYTSLEHLKIVISCMSMTSFTLGSLPVLRSLDLSYCTNLKSILIAEDASQSLSFLQSICIVSCDELESFSPVGLPTPNLIHLSVSWCKKLHSLPEPMNTFPDLQKLDIGYLPNLQSFAKEGLPINLSLHDDDIVNVLMKMEVPSSIVSLSIYSLDDIECLDGKWLHHLTSLQTLRISFCDNLKSLPRGIAFLSPNSGDH. 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07217 1135 SUPERFAMILY L domain-like 465 874 - -
Seca3g07217 1135 Gene3D - 126 298 IPR027417 -
Seca3g07217 1135 PRINTS Disease resistance protein signature 244 258 - -
Seca3g07217 1135 PRINTS Disease resistance protein signature 959 975 - -
Seca3g07217 1135 PRINTS Disease resistance protein signature 342 356 - -
Seca3g07217 1135 PRINTS Disease resistance protein signature 170 185 - -
Seca3g07217 1135 Pfam Rx N-terminal domain 20 100 IPR041118 -
Seca3g07217 1135 FunFam Probable disease resistance protein At1g63360 389 476 - -
Seca3g07217 1135 Pfam NB-ARC domain 169 370 IPR002182 GO:0043531
Seca3g07217 1135 SMART LRR_typ_2 1104 1128 IPR003591 -
Seca3g07217 1135 SMART LRR_typ_2 621 644 IPR003591 -
Seca3g07217 1135 SMART LRR_typ_2 551 574 IPR003591 -
Seca3g07217 1135 SUPERFAMILY RNI-like 808 1052 - -
Seca3g07217 1135 Coils Coil 40 60 - -
Seca3g07217 1135 Gene3D Ribonuclease Inhibitor 530 886 IPR032675 -
Seca3g07217 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 403 IPR027417 -
Seca3g07217 1135 Gene3D - 388 476 IPR036388 -
Seca3g07217 1135 Gene3D - 26 125 - -
Seca3g07217 1135 PANTHER DISEASE RESISTANCE PROTEIN RP 40 863 IPR044974 GO:0006952
Seca3g07217 1135 FunFam Probable disease resistance protein At1g61300 128 297 - -
Seca3g07217 1135 Gene3D - 305 387 IPR042197 -
Seca3g07217 1135 Gene3D Ribonuclease Inhibitor 912 1060 IPR032675 -
Seca3g07217 1135 Gene3D Ribonuclease Inhibitor 1061 1132 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07217 Seca-Chr3 170932021 170935677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07217 546 650 WRKY Transcription Factor Family AT4G12020 37.736 6.06e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07217 - - tpra:123916222 1442.56