Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07212 ATGAGTATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCCTTGCATCAACAACACCAAGGCCAACCCATTTCACAAGACCATAGTTCCAACCTTCCTCTGCCTTCATCAACTGCTCTCAGTGTTGGGTTTGGCATTTTTCCACTCCTAACTGCCACACCCTGCATGCCACAAACACAGAACAATGAGGTTCAAGAGTGTAACAACAACACAAACAACAACAACAGTAGCATCAATTATTGGAACCTTAAGATGTGCCCAGAAGTGAATCCTCCAAAAAAAGGAGTGATCAACGTGGATGATGAGAGCCACAACAAGCTCATGATGGAGAGCGAAGAAAACGGAGTCTATGGTGCTGATTTCAGGGTGTGTCAGGATTGTGGTAACAGAGCAAAGAAAGATTGCCTTTATAGAAGATGCAGGACTTGTTGCAAAGGACGTGGATATGACTGCAACACTCACGTGAAGAGCACGTGGGTTCCCTCAATTCGCCGCCGGGAGCGTGAGATGGCGGTGGTTTCTGCCGCCGGTGGTGGTGATGGAGCTAAGAGGCCAAGACCTTTAGTGGGGTCATCACACAATGCCACTGCCACTTCTCATAGTTCTAACTCTAATGCTACCACTTGTCACCAAGATGCTGGCTTCAAAGAGTCTTTACCAGGTCATGTTCGTGCACCTGCTGTGTTTAGGTGCCATAGAGTCACAGCTATTGGCAATGGTGAAGATGAATTTGCCTACATGGCTACGGTTCATATAAGTGGCCATGTGTTCAAGGGGTTTCTTTATGATTATGGTGTTGATGGGAAAAATGCAATGCCTTGTGTTTCAGAATTGCAACTGGGAAATGGAAGGAATGGGGAATGTTCTTCTGCAATTGGGGTTCCAACCACTAATGCCTACCCTGCTTCTGCTAGCTGA 927 0.4671 MSMLGLRDLVLIAPTPSLHQQHQGQPISQDHSSNLPLPSSTALSVGFGIFPLLTATPCMPQTQNNEVQECNNNTNNNNSSINYWNLKMCPEVNPPKKGVINVDDESHNKLMMESEENGVYGADFRVCQDCGNRAKKDCLYRRCRTCCKGRGYDCNTHVKSTWVPSIRRREREMAVVSAAGGGDGAKRPRPLVGSSHNATATSHSSNSNATTCHQDAGFKESLPGHVRAPAVFRCHRVTAIGNGEDEFAYMATVHISGHVFKGFLYDYGVDGKNAMPCVSELQLGNGRNGECSSAIGVPTTNAYPASAS. 309
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07212 308 MobiDBLite consensus disorder prediction 177 210 - -
Seca3g07212 308 NCBIfam putative zinc finger domain, LRP1 type 126 168 IPR006510 -
Seca3g07212 308 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 48 294 IPR007818 GO:0003700|GO:0006355
Seca3g07212 308 Pfam Domain of unknown function (DUF702) 126 270 - -
Seca3g07212 308 MobiDBLite consensus disorder prediction 194 210 - -
Seca3g07212 308 NCBIfam LRP1 C-terminal domain 222 269 IPR006511 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g07212 Seca-Chr3 170863176 170864578 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07212 1 294 C2H2 Transcription Factor Family AT5G12330 41.693 4.43e-58 190
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca3g07212 DUF702 4.2e-54 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07212 - - gmx:100806835 442.58