Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07196 ATGGGTATGGCTGCAGAGGCACAGTTTCATGTTTTGGCTGTTGATGATAGTCTTGTTGACAGAATGTTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGTTACTGCTGTGGATTCTGGTTGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAGCAGAGGAGGGAAGAGCTTCCTTTTGTTGCTCCAGAAACCCATCAGGATGTAGAAGTAAACCTGATCATCACTGATTACTGTATGCCAGGAATGACAGGCTATGATCTGCTGAGAAAGATCAAGGAATCTAAATCTCTTAAAGACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATTAACAGATGCCTAGAAGAAGGAGCTGAGGAATTCTTTCTGAAACCAGTTCAACAGTCAGATGTAAACAAACTCAGGCCCCATTTGTTGAAATCAAAAGTTAAGGAAGAGGAAGACCAACTCATCAACAACAAAAGGAAGGACACAGAAGAAAGTTATTCCCCAGATAAAACCAGACCAAAAATGTAG 537 0.4097 MGMAAEAQFHVLAVDDSLVDRMLIERLLKTSSFHVTAVDSGCKALKFLGLVEDEQRREELPFVAPETHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLRPHLLKSKVKEEEDQLINNKRKDTEESYSPDKTRPKM. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07196 178 CDD REC_typeA_ARR 11 141 - -
Seca3g07196 178 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 160 IPR045279 GO:0009736
Seca3g07196 178 SUPERFAMILY CheY-like 9 150 IPR011006 -
Seca3g07196 178 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160
Seca3g07196 178 MobiDBLite consensus disorder prediction 152 178 - -
Seca3g07196 178 Pfam Response regulator receiver domain 11 138 IPR001789 GO:0000160
Seca3g07196 178 SMART REC_2 9 142 IPR001789 GO:0000160
Seca3g07196 178 Gene3D - 10 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07196 Seca-Chr3 170375959 170377741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07196 1 178 Response Regulator Gene Family AT3G57040 54.185 7.23e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g07196 Response_reg 4.3e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07196 K14492 - gmx:100818762 282.337