Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07189 ATGTCCACGGACGATTCCTTCTCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTTACTCCTCCGGACAACGTCCCGCATTTCAATGAACGCTGCGAAGTCTTTAGCGACGGCGCGGAGGTCGGGTTCCGGTGCCAGAGCGGCGTCGTTTTGACTTCGTTGGAATGCGGGAGCTCGAAGGCGAAGAGGACGAGGAAGATTGGAGCGGTGAATGGGAGCGTAAGCGTGGTTCATCAGCTTCACGCATTGGTTAGCCGCAACTGCATGAAAATCGATGCTCATGTGGTGTGTGTTGAGGTGCCTAGGGCGGTGGTGCTCGTCGACGTTTACCTCCCTATTCAGTTGTGGAGTGGCTGGCAGTTCCCGAGATCGGGATCCGTTGCCGGTGCTATTTTTCTCCATTTGAGCTGTGATTGGGATGAGAGAAGTTCAATGCTTTCTTATCCAAACTATTATAGGCAGACTCATGGAGCAAATAAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGCTGCAAGCTCCATTCCCGTGTGAGCGATTCTTCAAGGAGAAAACTCTTTGAACTTCATGAAATCTTCAAGACAATACCTGGTGTAGGAAAACAGCATAAGTTTATTAGTTCCAAGATAGTACCTATGGATAATAACACTTGCGGATCTGGGATTTGGGAGATATCTGATGATATTTTAACTAAAATTATAGCTTCCTTGGGCCCGATGGACCTCACTAAGGTTTCTGCAACGTGTCGTCATCTAAGATCCTTGGCTGCATCAGTAATGCCTTGCACAAAGTTAAATCTGTATCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAACTTTTGCCACATCCTTTATATGTAGCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATAGTCACTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATTGTGAAGACGCAAAGTACATTGGCCAACCCACCAAATGGAGCACAAGTAGTCTGGTGTCAACATAATGGTAACAAGAAATGTGGCTATTATGAGATCAGTGGTAATAACGTTACTGGTTGTACTATCTCGGGTAAGAGGGATGTGTGCCAAGATACCAGTAGAAATAATGAGAACCATGATTACCCCTCCAAAAGAGCTAGATTGATGGATCCTGGTCAGAAAATCACTAAACTTCATGGTTCTTGTTCTGGAGAAGAAAACAAATCACCAGTAGATGCTAGCTTTGAGGAATCTATGCCTGCAAGTCGGTGCACTAGGAGCTTGAGTCGCATAAAAAAGAATCTAAATTTCACATATGAAGAAGAAGCAATGGTGTTCGATGGAAGAAAAGTCGGTGAAAGATCAATAAAAGCAAAGCAAGCATCAGATGTTGCATCCCATGGATCTGAAAACAAGCTAGTTGATACCTCACATGGATGTGGACAGAGTCACAAGTGGCCTAGGAAGAATAAAGTTGATAGTTTGGAATACAACGATACATGGATTCAGTGTGATGCTTGTCGCAAGTGGCGAAAGCTCTCAGACAGTAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTATATCAGAGTTGTAGTGTCCCTGAACAATATTTTCAGAATAGCTGGAAGATAACATACATGCCAGGATTTTACTTGAAAGGAACTTCTGGGGGTGACAAACAAAATGTTTCATTTTTCATTAGTGTGCTCAAGGAGCACTACTCATTGATAAATTCTCAGACTAGGAAAGCCCTTACTTGGTTGGCTAAAATTTCAATGGACAAGCTTGCATTAATGGAAACAAATGGCATACGGGGTCCTATTTTAAACAATTGCACTGTGTCTAATGGGCATTTTAATCCATTCCACAAAATATTTCTAGCATTTGGCCTCATAAAGAGAGTTGAGAAAGGTGTATGCAGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCCGTGAGCCATTGGATTTTGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACCTGGTTGATCATTGGAAATCACAAATTGAAAAGCATGTTAGGCCTGGTCAATTGCGGGTTTATGCTTGGACTGATCATCAGAAGCCATCTGCACACTGTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTAAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTCTGATGCAAGTGCACTGGTTTAGAATAATTTTAGATGAAGGGCATACCCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGACGGCTACAAATCGATGGATACTAACAGGAACTCCAACACCTAACACCCCTAACAGCCAACTTTCACATCTACAACCTTTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCCGAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGTCGGTCTCGTCTGCTGCATTTACTTCACAAATGCATGATTAGTGCAAGAAAAATAGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTTCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTACTCACAGTTCGGCGTAATATATTGATGGCTGATTGGAACGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGCAGTGCAACTATAAAAAATGTTAGACTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATGTTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTAGATCCTACTTCAGGAGAGTATGCCTCCATAAGATACAATCTCCTGTTTGGTGGTCAATGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTCTCATTACACCATGTCGGCATCTATTGTGCCTGGATTGTGTTTCAATAGACAATACGATGTGTACATATCCTGGCTGCGGTAACTTATATGAGATGCAGAGTCCTGATACAATGGCACGACCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTCTCCTATCTTGTACAAAGGTTGAAAGCTTTGCAAGGAACCAGTGAAGAGATGAGCTGCTATACAAATAATAGCAATGATGAGATGCATACCAAGAATAGTTTCCCTTTTCATACGAGAGATGTGAAATCATCATTCCAGGAATGTTCTATAAGTAGCACTAAGGCCAATTTTGTTCCTGAAAAAGTTCTGATATTTTCTCAATTTCTTGAACATATACATGTCATTGAACAGCAGGTGCTTTTTCTGTGCCACAGTGTGGCTGTGATCTTTTGTGAATCTTTTCTATTTTATCTTGTAGCCATCTGCAAATCCTTTTACAAATGA 3603 0.4238 MSTDDSFSDHKLCGFLCAVLTVTPPDNVPHFNERCEVFSDGAEVGFRCQSGVVLTSLECGSSKAKRTRKIGAVNGSVSVVHQLHALVSRNCMKIDAHVVCVEVPRAVVLVDVYLPIQLWSGWQFPRSGSVAGAIFLHLSCDWDERSSMLSYPNYYRQTHGANKSIWNLSDCHVLGCKLHSRVSDSSRRKLFELHEIFKTIPGVGKQHKFISSKIVPMDNNTCGSGIWEISDDILTKIIASLGPMDLTKVSATCRHLRSLAASVMPCTKLNLYPHQQAAVEWMLHRERNAELLPHPLYVALSTDDGFSFHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIVKTQSTLANPPNGAQVVWCQHNGNKKCGYYEISGNNVTGCTISGKRDVCQDTSRNNENHDYPSKRARLMDPGQKITKLHGSCSGEENKSPVDASFEESMPASRCTRSLSRIKKNLNFTYEEEAMVFDGRKVGERSIKAKQASDVASHGSENKLVDTSHGCGQSHKWPRKNKVDSLEYNDTWIQCDACRKWRKLSDSSMANSSAAWFCSMNTDPLYQSCSVPEQYFQNSWKITYMPGFYLKGTSGGDKQNVSFFISVLKEHYSLINSQTRKALTWLAKISMDKLALMETNGIRGPILNNCTVSNGHFNPFHKIFLAFGLIKRVEKGVCRWYYPQNLNNLTFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKSQIEKHVRPGQLRVYAWTDHQKPSAHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLTATNRWILTGTPTPNTPNSQLSHLQPLLRFLHEEAYGLNPKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKIDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDVQETMDMLVQSGLDPTSGEYASIRYNLLFGGQCVRCKEWCRLPLITPCRHLLCLDCVSIDNTMCTYPGCGNLYEMQSPDTMARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALQGTSEEMSCYTNNSNDEMHTKNSFPFHTRDVKSSFQECSISSTKANFVPEKVLIFSQFLEHIHVIEQQVLFLCHSVAVIFCESFLFYLVAICKSFYK. 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07189 1200 SMART fbox_2 229 269 IPR001810 GO:0005515
Seca3g07189 1200 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 107 1171 - -
Seca3g07189 1200 CDD F-box_SF 228 260 - -
Seca3g07189 1200 Pfam SNF2-related domain 274 940 IPR000330 GO:0005524|GO:0140658
Seca3g07189 1200 Gene3D - 523 577 - -
Seca3g07189 1200 ProSitePatterns Zinc finger RING-type signature. 1020 1029 IPR017907 -
Seca3g07189 1200 CDD DEXDc_SHPRH-like 706 883 - -
Seca3g07189 1200 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 677 842 IPR014001 -
Seca3g07189 1200 MobiDBLite consensus disorder prediction 491 507 - -
Seca3g07189 1200 Pfam F-box domain 229 263 IPR001810 GO:0005515
Seca3g07189 1200 MobiDBLite consensus disorder prediction 487 516 - -
Seca3g07189 1200 SMART ultradead3 267 866 IPR014001 -
Seca3g07189 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 881 IPR027417 -
Seca3g07189 1200 Gene3D - 691 886 IPR038718 -
Seca3g07189 1200 ProSiteProfiles Zinc finger CW-type profile. 524 575 IPR011124 GO:0008270
Seca3g07189 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 353 IPR027417 -
Seca3g07189 1200 Pfam CW-type Zinc Finger 529 572 IPR011124 GO:0008270
Seca3g07189 1200 SUPERFAMILY F-box domain 219 262 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07189 Seca-Chr3 170199079 170210325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07189 712 1106 RAD5 or RAD16-like Gene Family AT5G22750 26.959 2.59e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g07189 SNF2_N 5.2e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07189 - - gmx:100803102 1950.64