LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g07181	ATGTCAAAGAGAAAGGTTAGAGAGCCCAAGGAGGAAAATGTCACCCTTGGTCCTGCTGTAAAAGACGGTGAGCATGTTTTTGGTGTGGCTCGCATTTTTGCATCTTTTAATGACACCTTCATTCATGTGACTGATTTGTCTGGAAGGGAAACACTTGTCCGCATTACTGGTGGAATGAAGGTTAAGGCTGACAGAGATGAGTCCTCTCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTGCCAGATGCAAGGAGTTGGGCATAACTGCTCTTCACATCAAACTCCGTGCAACAGGAGGAAACAAGACAAAAACACCTGGCCCTGGTGCTCAGTCTGCTCTCCGTGCCTTGGCTCGGTCTGGGATGAAAATTGGCCGCATAGAGGATGTGACTCCAATTCCTTCAGACAGCACACGTAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTGA	453	0.479	MSKRKVREPKEENVTLGPAVKDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL.	151

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g07181	150	FunFam	40S ribosomal protein S14	1	150	-	-
	Seca3g07181	150	MobiDBLite	consensus disorder prediction	130	150	-	-
	Seca3g07181	150	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	1	147	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g07181	150	Hamap	30S ribosomal protein S11 [rpsK].	3	147	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g07181	150	ProSitePatterns	Ribosomal protein S11 signature.	115	137	IPR018102	-
	Seca3g07181	150	Gene3D	Ribosomal protein S11	1	150	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g07181	150	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	3	143	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g07181	150	Pfam	Ribosomal protein S11	28	146	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g07181	150	SUPERFAMILY	Translational machinery components	23	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g07181	Seca-Chr3	169995669	169999089	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g07181	1	139	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	90.647	1.92e-92	263

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g07181	K02955		-	gmx:100786325	265.774