Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07172 ATGGAGATGTCTATACAGCAAGAAAATTCTGATATCAACGGTGTATCAGGGTCAGGATCTTGCCTTTACGATCTCTTCTGCTCTGAAACGCCAAGTTTGAATACTCACAGTCAAAGAGAATGGATGTTTTCTGGTCCGCAGAAAAGGCTAGACAATCTGATGCGTCAAGCTGGGAACAAGTTCTGTGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTCTTCGAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGTATACATCGAAGCGTAGGAGTCCATATATCTAAGGTTCTATCACTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAAATTGGGAGGAAATACAGTAATCAACAAGAAATATGAAGCTTGCCTGCCAAGCCATATAAAAAAACCAAAACCAAATTCTTCCATTGAGGAGCGCTCTGATTTTATTAGGAAAAAATATGAGCAGCTACAGTTTTTGGATTCTGAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCAAGGAAGAAGTTCATCATCCTCTCAGAGCAGTTCCTCATGCAACAATTCTCAACAAGACAAAAAACGTTATGATAAACAACCAACTAAAAATCGTATTGGGCTATCATTTCGAAATAGCTGGGGAAGAAAAGATTCTGATCAACATAAGAGTGCAAAGAAGAGCAACTCGTTGGCAGGTATGATTGAATTTGTTGGGTTGATCAAGGTTAATGTGGTTAAAGGCACTAACCTAGCTATCCGGGATGTAGTGACTAGTGACCCTTATGTCATCCTTGCTTTGGGTCACCAATCAGTAAAGACACGTGTCATAAAGAACAATTTAAATCCAATTTGGAACGAAAGCCTAATGTTGTCAATTCCCGAGAGCATTCCTCCTCTTAAAGTGGTTGTGTATGACAAGGATACTTTCTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTTTCAGCTGCAAAGGCATATGAAAAATCTTCAATCAATGAGTCCATGCAGCTTGGAAAATGGGTAGCAAGTGGTGACAACACTCTTGTGAAAGATGGTATCATCACCCTTGAAGAAGGGAAGGTCAGACAGGACATCTCAGTGAGGCTACAGAAAGTTGAGAGAGGTGTGCTGGAGATTCAGCTTGAATGCGTTCCTCTTACTCAGTAG 1194 0.407 MEMSIQQENSDINGVSGSGSCLYDLFCSETPSLNTHSQREWMFSGPQKRLDNLMRQAGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSVGVHISKVLSLKLDEWTDEQVDALVKLGGNTVINKKYEACLPSHIKKPKPNSSIEERSDFIRKKYEQLQFLDSEENLSCPFVPSQGRSSSSSQSSSSCNNSQQDKKRYDKQPTKNRIGLSFRNSWGRKDSDQHKSAKKSNSLAGMIEFVGLIKVNVVKGTNLAIRDVVTSDPYVILALGHQSVKTRVIKNNLNPIWNESLMLSIPESIPPLKVVVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDGIITLEEGKVRQDISVRLQKVERGVLEIQLECVPLTQ. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07172 397 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 239 397 - -
Seca3g07172 397 MobiDBLite consensus disorder prediction 172 204 - -
Seca3g07172 397 PRINTS HIV Rev interacting protein signature 59 78 IPR001164 GO:0005096
Seca3g07172 397 PRINTS HIV Rev interacting protein signature 99 120 IPR001164 GO:0005096
Seca3g07172 397 PRINTS HIV Rev interacting protein signature 78 95 IPR001164 GO:0005096
Seca3g07172 397 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 42 397 IPR044518 GO:0005096|GO:0005543
Seca3g07172 397 FunFam stromal membrane-associated protein 1 isoform X1 33 167 - -
Seca3g07172 397 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 240 332 IPR035892 -
Seca3g07172 397 Pfam C2 domain 242 332 IPR000008 -
Seca3g07172 397 SUPERFAMILY ArfGap/RecO-like zinc finger 47 162 IPR037278 -
Seca3g07172 397 ProSiteProfiles ARF GTPase-activating proteins domain profile. 47 169 IPR001164 GO:0005096
Seca3g07172 397 SMART arf_gap_3 48 169 IPR001164 GO:0005096
Seca3g07172 397 ProSiteProfiles C2 domain profile. 219 339 IPR000008 -
Seca3g07172 397 CDD C2_ArfGAP 240 384 - -
Seca3g07172 397 Pfam Putative GTPase activating protein for Arf 48 163 IPR001164 GO:0005096
Seca3g07172 397 MobiDBLite consensus disorder prediction 172 193 - -
Seca3g07172 397 CDD ArfGap 50 156 - -
Seca3g07172 397 Gene3D C2 domain 240 395 IPR035892 -
Seca3g07172 397 Gene3D Arf GTPase activating protein 32 169 IPR038508 -
Seca3g07172 397 SMART C2_3c 242 337 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07172 Seca-Chr3 169774451 169781697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07172 47 397 C2H2 Transcription Factor Family AT4G05330 46.724 3.98e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07172 K12486 - gmx:100799376 660.218