Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07146 ATGGAAATGGAGCAACGAGTGCTTCCTTCTTCCAAGAGTGGGTTCACTTATGATGTTTTCCTCAGTTTTAGAGGAGAAGATACCCGCTATGGTTTCACTGGCAATCTCTACCATGCCCTGCAACAAAGAAGAATCAACACTTTCATGGATGATGAGGTGATTCAGAGAGGTGAACAAATTTCACCTGCTATTTTCAAAGCCATTGAAGAGTCTAGGATGGCCATAATTGTGTTCTCTAAAAGCTATGCATCCTCCAAATGGTGCCTTGAAGAACTTGTCAAAATCCTTGATTGTTTCAGAGCCAAGGAACGCGTGGTTTATCCCGTGTTTTACAACGTGGATCCATCAGAGGTACGGCATCAGAGAGGAAGTTATGGAGAACAATTGGCCATGCATGAAGAGAAAATGAAGGATGACAAGGAGAAAGTGCAAAGCTGGAGGGTGGCACTGTATGAAGCAGCCAATCTGGCAGGGTGGCCTTTTAGAGATGGATACGAATATGAATATCAATTTATCAGACGGATCATTGACAAGGTGTCCAGCACATTAAAATGCAATATTTTACATTCTGATGAATATGCAGTAGGACTAGAGTCCCGTGTATCCAAAATAACATACCGTTTGCAAATCTTAGATCCCACTGTCATCATGGTAGGAATATGTGGAGTTGGTGGAATAGGCAAAACTACTTTGGCAAGAGCTGTGCATAATTCCATTGGCCAACAGTTTGAAGGTTTATGCTTTCTTGGTGATGTTAGAGGAAATTCAACCAAATATGGGTTAGCATATCTCCAAGAGGTAATTCTTTCTGATACAGTTGGTGAGAACATCAAGTTGTATAATGAGCATGAAGGAATTCCAATCCTAATTAGAAAATTGCAAGATAAAAGGATTCTTTTGATACTTGATGATGTGGACAAGTTGGAGCAATTGAAGAATTTGGCAGGAGCATGTAGTTGGTTTGGTTGTGGCAGTAGGATTATCATAACTACCAGGTATAAAGATATTCTAGCTGCTCATGGAGTTGGAAATATATATGATGTACCTAAATTAGTGTATTATGAAGCTCTTCAACTTTTAACTTCCAATTCATCTGAAAGACCTTACTCTGATGCAATCTGGAAACGTACAATCTCCTATTCTGATGGCCTTCCATTGGTTTTGAAGGTTATAGGTTCTGATTTATTAGAAAAATCAACAGATGAATGGGAGTTTGCATTAGACAGATATGAAAAAGTTCGCAATGAGGAAATTCAGACTATACTTAAAGTGAGTTATGATAGTTTGAATGAATGTGAGAAGAGAATTTTCCTTGACATTGCATGCTTCTTCACTGGAGAGCCATTGCCACATGTTGAAGGAATACTATGTGCTTGTGGTTTCTATCCAAACTATGGTATTAGCAGACTTATGGATAGGTCTCTCTTATCTGTCAGTCCCAGTGGAAGGTTGATGATGCATGACCATATAATAGACATGGCTTTGAAAATAGTACAACAAGAATCACCCATGCATCCTGGCAATCGAAGCAGGTTATGGTTACCTAAGGATGTTCTTCAAGTTTTAGATGAAAATGTGGTAACTGATAAAGTTGAAGTCATGATGTTGGACAACTTACCACAAGAAAATGCAGTGAAATTGAGTGACAAAGCCTTCAAAAAGATGGAAAGCCTGAGAATACTAATTATTAAGGATGCAATATATTCTGAAATCTTCCAACATCTCCCAAATAGCTTAAGAGTTCTGCACTGGAGTGGATTTCCTTCATGGTGTTTACCACCTGATTTTATCAACTTGCCTTCTAATTGTCTCATTTTGAACAAGTTCAAGAATATGAAGAGTTTGACTAGAATGGATTTCACTGATTGTAAGTTTCTGTCAGAAGTACCTGATGTGTCTGGTGTCCCAAACTTAAGGACATTGTATCTTGATAACTGTATAAATGTGGTCAAAATTCATGATTCTGTTGGATTTCTTTGTAATCTTGAAGAGCTGACTGCCACAGGATGCATCAATCTAAAAACAATTCCATTTACATTCAAGTTGGCATCTCTTAGAGTTCTCTCTTTCTCTGAGTGCTCAAGACTCATGAGGTTTCCAGAAATATTGTGCAAAATAGACAATTTAAGGCATGTCAACTTGTGGCAAACTGCCATAGAGGAATTACCATTTTCAATTGGAAATCTGACAGGGCTTGAAGTTTTAACTCTTATGGATTGTACTAGGCTTGATAAGCTACCCAGTAGCATTTTTACATTGCCAAGACTTCAGGAAATTCAAGCCGACTCCTGTAAAGGGTTTGGCATTTCTATTGAGTGTGAAGATCATGGACAATTGAAATTCACTGTGTCTCCAAATAAGATTCATCTGTATCTGAGCTCTTGCAATTTAACAGATGAACATCTTCATATATGTCTCAGCGGTTTTGCTAATGTGGTTTATTTGGACATATCATACAATAATTTCACAGTCCTTCCAGCATGCATTACAGAATGTATCCACTTGAAGACTCTTCTGCTAACAAACTGCAAGCAGCTTCGAGAAATTTCAGTGGTTCCCCCAAAATTGCAAGACATAGATGCATTGAACTGCACATCATTGACATCCCAATCATCAAGTGTACTACTGAACCAGGTTTCCTCTTTGATGTTTCCTGTTTGA 2661 0.3829 MEMEQRVLPSSKSGFTYDVFLSFRGEDTRYGFTGNLYHALQQRRINTFMDDEVIQRGEQISPAIFKAIEESRMAIIVFSKSYASSKWCLEELVKILDCFRAKERVVYPVFYNVDPSEVRHQRGSYGEQLAMHEEKMKDDKEKVQSWRVALYEAANLAGWPFRDGYEYEYQFIRRIIDKVSSTLKCNILHSDEYAVGLESRVSKITYRLQILDPTVIMVGICGVGGIGKTTLARAVHNSIGQQFEGLCFLGDVRGNSTKYGLAYLQEVILSDTVGENIKLYNEHEGIPILIRKLQDKRILLILDDVDKLEQLKNLAGACSWFGCGSRIIITTRYKDILAAHGVGNIYDVPKLVYYEALQLLTSNSSERPYSDAIWKRTISYSDGLPLVLKVIGSDLLEKSTDEWEFALDRYEKVRNEEIQTILKVSYDSLNECEKRIFLDIACFFTGEPLPHVEGILCACGFYPNYGISRLMDRSLLSVSPSGRLMMHDHIIDMALKIVQQESPMHPGNRSRLWLPKDVLQVLDENVVTDKVEVMMLDNLPQENAVKLSDKAFKKMESLRILIIKDAIYSEIFQHLPNSLRVLHWSGFPSWCLPPDFINLPSNCLILNKFKNMKSLTRMDFTDCKFLSEVPDVSGVPNLRTLYLDNCINVVKIHDSVGFLCNLEELTATGCINLKTIPFTFKLASLRVLSFSECSRLMRFPEILCKIDNLRHVNLWQTAIEELPFSIGNLTGLEVLTLMDCTRLDKLPSSIFTLPRLQEIQADSCKGFGISIECEDHGQLKFTVSPNKIHLYLSSCNLTDEHLHICLSGFANVVYLDISYNNFTVLPACITECIHLKTLLLTNCKQLREISVVPPKLQDIDALNCTSLTSQSSSVLLNQVSSLMFPV. 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07146 886 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Seca3g07146 886 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Seca3g07146 886 PRINTS Disease resistance protein signature 381 395 - -
Seca3g07146 886 PRINTS Disease resistance protein signature 680 696 - -
Seca3g07146 886 PRINTS Disease resistance protein signature 292 306 - -
Seca3g07146 886 PRINTS Disease resistance protein signature 217 232 - -
Seca3g07146 886 Pfam TIR domain 17 184 IPR000157 GO:0007165
Seca3g07146 886 Gene3D - 351 430 IPR042197 -
Seca3g07146 886 SMART till_3 16 156 IPR000157 GO:0007165
Seca3g07146 886 SMART AAA_5 214 352 IPR003593 GO:0016887
Seca3g07146 886 SUPERFAMILY L domain-like 537 882 - -
Seca3g07146 886 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 778 IPR044974 GO:0006952
Seca3g07146 886 Gene3D Ribonuclease Inhibitor 537 696 IPR032675 -
Seca3g07146 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 440 IPR027417 -
Seca3g07146 886 Pfam NB-ARC domain 198 432 IPR002182 GO:0043531
Seca3g07146 886 Gene3D Ribonuclease Inhibitor 697 883 IPR032675 -
Seca3g07146 886 SUPERFAMILY "Winged helix" DNA-binding domain 417 522 IPR036390 -
Seca3g07146 886 Gene3D - 182 342 IPR027417 -
Seca3g07146 886 Gene3D - 10 181 IPR035897 -
Seca3g07146 886 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 159 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07146 Seca-Chr3 169082675 169087834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07146 9 853 WRKY Transcription Factor Family AT4G12020 28.214 2.38e-75 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07146 - - gmx:100796191 1252.27