Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07139 ATGAATGCTTCTCATTATGAGACCTTATCTATAAAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCGGGTTCAATACAACCAACACTTATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGATACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCTGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGTGGTCGTGAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACCGATGATGTCAAGCATGTTTTAGATTGCCTTGAAAAGATTAAAAAATGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAAAGAGAATTCAAAGAATGAACACAAGAAGTATATGGCTAAAGCATTGAGAGAAAGCACTGGGATCCTAATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTTAAGACTGAGGAAAGAGTTGATGAAAGTAGAGATAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATGAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAATTTCTTCCTAGATGACATTGCTAACAAAATTGGCTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCATATGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGAAAATTTATACTCTGCTTATAAACCTAACTGATGTGCAAAATGAGCTTTTGCAGAAAATACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTACGGTAACCTTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACTCTTCACAGGAACTAAACAAGCTAGAGAGGTTCAAGTCTGATTTCAGGGTAGGTTCAAAAGTGAGATTTATTTTGAACCTTATCACTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACATATGAAGCTTTTGGTACAATTGTTTGAGGATTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGAAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCTTTACTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTTGGTTGATATTTTTGGATTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTCGAAAGAGTGGGTTTCCAACATGATTTTTAATGAGGATTTTGCGGAGAAACCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATAATATACTGAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAACCTTCAACAAACTGA 1824 0.3805 MNASHYETLSIKNDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEAKSERRGGCVISHTPGAGKTFLVIAFLVRYLKLFPDKKPLILAPKTTLYTWYKEFCKWEIPIPVYLIRGRENLRDFDETPLTIPGVPNPTDDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTKENSKNEHKKYMAKALRESTGILILDEGHNPRSTRLRLRKELMKVEIELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDENPEKAKHLLETRARNFFLDDIANKIGSSDDEVRMQGLNMLRKIICGFIDVYESGNSDKLPGLKIYTLLINLTDVQNELLQKIQKKMVGSSVFPLEGELTVTFGSIHPWLIKTATSSNKFYSSQELNKLERFKSDFRVGSKVRFILNLITRVVKKEKVLIFCRNLAHMKLLVQLFEDCFKWKKGGEILLLYGKQDLFERGKVIDKFEDPCGVSKVLFTSITACAEGISLTAASWLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTSKEWVSNMIFNEDFAEKPSQWQAEKIEDNILREMVENDNPKAIHMIMKNEKPSTN. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07139 607 Pfam SNF2-related domain 36 354 IPR000330 GO:0005524|GO:0140658
Seca3g07139 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 253 IPR027417 -
Seca3g07139 607 CDD SF2_C_SNF 402 538 - -
Seca3g07139 607 Gene3D - 3 291 IPR038718 -
Seca3g07139 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 577 IPR001650 -
Seca3g07139 607 SMART helicmild6 438 527 IPR001650 -
Seca3g07139 607 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 605 IPR044567 GO:0080188
Seca3g07139 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 588 IPR027417 -
Seca3g07139 607 Pfam Helicase conserved C-terminal domain 410 526 IPR001650 -
Seca3g07139 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca3g07139 607 Gene3D - 330 606 IPR027417 -
Seca3g07139 607 SMART ultradead3 23 263 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07139 Seca-Chr3 168857334 168859157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07139 453 562 RAD5 or RAD16-like Gene Family AT5G05130 35.135 6.55e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g07139 SNF2_N 1e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07139 K10875 - gmx:100811703 850.121