Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07138 ATGAATGCTTCTCATTATGAGACTTTATCTATAGGAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCGGGTTCAATACAACCAACACTTATGGAAGCAAAATCTGAAAGAAGAGGAGGTTTTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAATTCCAAACCCCACCGATGATGTCAAGCATGTTTTAGATTGCCTTGAAAAGATTAAAAAATGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGATAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCATTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCATGGCTGAGGAAAGAGTTGACGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATTATTTTAGTGAATACTTCAACACACTTTGTTTGTCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGCGAAATGATGAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAATTTCTTCCTAGATGACATTGCTAACAAAATTGGCTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAAAAAGAGCTTTTGCAGAAAATACAAAAGAAAATGGTTGGTTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACTCTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGATAA 1245 0.3775 MNASHYETLSIGNDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEAKSERRGGFVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKIPNPTDDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRDNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSWLRKELTKVETELRILLSGTLFQNYFSEYFNTLCLSRPKFVQEVLKELDTKQKKRNDENPEKAKHLLETRARNFFLDDIANKIGSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQKELLQKIQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYSSQELNQLEKFKSDFRVGSKVRFILNLIIRVVKKEKVLIFCRNLAPMKLLVQLFEECFKWKKGG. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07138 414 SMART ultradead3 23 223 IPR014001 -
Seca3g07138 414 Gene3D - 5 249 IPR038718 -
Seca3g07138 414 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 211 IPR014001 -
Seca3g07138 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 213 IPR027417 -
Seca3g07138 414 Pfam SNF2-related domain 36 317 IPR000330 GO:0005524|GO:0140658
Seca3g07138 414 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 413 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07138 Seca-Chr3 168803986 168805350 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g07138 SNF2_N 9.8e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07138 K10875 - jre:108991882 559.296