Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07135 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCGAGTTCAATACAACCAACACTTATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCTGCAAGTGGGAGACTATTCCTGGAGTTCCAAACCCCACCGATGATGTCAAGCATGTTTTAGATTGCCTTGAAAAGATAACAAGAGATAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCATTGAGAGAAAGCTCTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCATGGGTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTAGTGAATACTTCAACACATTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGTTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATGAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGGTAGGAATTTCTTCCTAGATGACATTGCTAACAAAATTGGCTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGGTGTTTATGAGAGTGGGAATTCTGACAAGATTCCTGGTTTGCAAATTTATACTCTACTTATGAACCTAACTGATGTGCAAAATGAGCTTTTGCAGAAAATACAAAAGAAAATGGTTGGGTCAAGCATGTTCCCTTTGGAAACAACAACAAGTTTGAATAAGTTTTACTCTTCACAGGAACTAAACCAGCTAGAGAAGTTCAATTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCATTCTTGTTGTCAAGAAGGAGAAGCAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTCAGGATCCGTGTGGAGTTTCAAAGGTACTCCTTTCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTTAGTGAGGATTTTGCGGAGAACCCTTCCCAGTGGCAAGTAGAGAAGATTGAAGATGATATACTGAGGGAAATGTTTGAGAATGACAATCCTAAAGCAATCCATATGATCTTGAAGAATGAAAAACCTTCAACAAACTGA 1527 0.3824 MHDHQKKGFQFIWQNIASSIQPTLMEAKSERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFCKWETIPGVPNPTDDVKHVLDCLEKITRDNSKYEHKKYMAKALRESSGILILDEGHNPRSTRSWVRKELMKVETELRILLSGTLFQNNFSEYFNTFCLARPKFVQEVLKELDTKQKKGNDENPEKAKHLLETRGRNFFLDDIANKIGSSDDEVRMQGLNMLRKITSGFIGVYESGNSDKIPGLQIYTLLMNLTDVQNELLQKIQKKMVGSSMFPLETTTSLNKFYSSQELNQLEKFNSDFRVGSKVRFILNLIILVVKKEKQLFEECFKWKKGGEILLLYGEQDLFERGKVIDKFQDPCGVSKVLLSSITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFAENPSQWQVEKIEDDILREMFENDNPKAIHMILKNEKPSTN. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07135 508 Pfam SNF2-related domain 15 305 IPR000330 GO:0005524|GO:0140658
Seca3g07135 508 CDD SF2_C_SNF 323 439 - -
Seca3g07135 508 SMART helicmild6 343 428 IPR001650 -
Seca3g07135 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 185 IPR027417 -
Seca3g07135 508 Gene3D - 274 503 IPR027417 -
Seca3g07135 508 SMART ultradead3 8 188 IPR014001 -
Seca3g07135 508 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 104 506 IPR044567 GO:0080188
Seca3g07135 508 Pfam Helicase conserved C-terminal domain 334 427 IPR001650 -
Seca3g07135 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 492 IPR027417 -
Seca3g07135 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 475 IPR001650 -
Seca3g07135 508 Gene3D - 1 220 IPR038718 -
Seca3g07135 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 183 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07135 Seca-Chr3 168738038 168739782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07135 354 479 RAD5 or RAD16-like Gene Family AT5G05130 33.858 2.01e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g07135 SNF2_N 5.3e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07135 K10875 - gmx:100811703 690.263