Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07134 ATGATGAAAATCCAGAGAGCAAAACATTTACTTGAGACACGTGCTAGGAATTTCTTCCTAGATGACATTGTTAACAAAATTGGCTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGATTATGAGAGTGGGAATTCTAACAAGCTTCCTGGTTTGCAAATTTATACTCTACTTATGAACCTAACTGATGTGCAAAATGAGCTTCTGCAGAAAATACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGAAACAAGTTCGAATAAGTTTTACTCTTCACAGGAACTAAATCAGCTAGAGAAGTTCAAGTCTGAATTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCAACTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTCAGGATCCGTGTGTAGTTTCAAAGGTATTAGTCTCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGATTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGAAAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCATGAAAAGATGGTTTATGTGTATCAACTCTTGGAAAAAGGCTCAATGGAGGAAGATAAGTACCTCAGAACCACTTGGAAAGAGAGGGTTTCCAACATGATTTTTAGTGAGGATTTTGCGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTGAGGGAAATGGTTGAGAATGACAATCCTAAAACAATCCATATGATCATGAAGAATGAAAAACCTTCAACAAACTGA 1020 0.3853 MMKIQRAKHLLETRARNFFLDDIVNKIGSSDDEVRMQGLNMLRKITSGFIDDYESGNSNKLPGLQIYTLLMNLTDVQNELLQKIQKKMVGSSVFPLEGELMVTLGSIHPWLIKTETSSNKFYSSQELNQLEKFKSEFRVGSKVRFILNLIIRVVKKEKVLIFCRNLATMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKVIDKFQDPCVVSKVLVSSITACAEGISLTAASRLIFLDSEWNPSKKKQAIARAFRPGHEKMVYVYQLLEKGSMEEDKYLRTTWKERVSNMIFSEDFAENPSQWQAEKIEDDILREMVENDNPKTIHMIMKNEKPSTN. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07134 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 322 IPR027417 -
Seca3g07134 339 Gene3D - 62 338 IPR027417 -
Seca3g07134 339 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 145 306 IPR001650 -
Seca3g07134 339 Pfam Helicase conserved C-terminal domain 142 258 IPR001650 -
Seca3g07134 339 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 8 337 IPR044567 GO:0080188
Seca3g07134 339 SMART helicmild6 170 259 IPR001650 -
Seca3g07134 339 CDD SF2_C_SNF 134 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07134 Seca-Chr3 168702529 168703606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07134 185 277 RAD5 or RAD16-like Gene Family AT5G05130 37.234 3.17e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07134 K10875 - jre:108991882 454.136