Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07133 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCGGGTTCAATACAACCAACACTTATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAAACCTTTCTTGTTATTGCCTTTCTTTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCATTGAGAGAAAGCACTGGGATCCTTATAATCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGCTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTATCAGGCACATCGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTACTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATGAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAATTTCTTCCTAGATGACATTGCTAACAAAATTGGCTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGTTTCCTGGTTTGCAAATTTATAATCTGTTTATGAACCTAACTGATGTGCAAAATGAGCTTTTGCAGAAAATACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAGCCCTTGGATCAAAACATCCATGGTTGATCAATACATCCATATGA 819 0.3761 MHDHQKKGFQFIWQNIAGSIQPTLMEAKSERRGGCVISHTPGAGKNLSCYCLSFMGYTSFLSLTRENSKYEHKKYMAKALRESTGILIIDEGHNPRSTRSRLRKELMKVETELRILLSGTSFQNNFGEYFNTLYLARPKFVQEVLKELDTKQKKGNDEIPEKAKHLLETRARNFFLDDIANKIGSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKFPGLQIYNLFMNLTDVQNELLQKIQKKMVGSSVFPLEGELMVALGSKHPWLINTSI. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07133 272 Pfam SNF2-related domain 60 238 IPR000330 GO:0005524|GO:0140658
Seca3g07133 272 Gene3D - 1 71 IPR038718 -
Seca3g07133 272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 147 IPR027417 -
Seca3g07133 272 Gene3D - 84 179 IPR038718 -
Seca3g07133 272 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 46 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07133 Seca-Chr3 168682185 168683262 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g07133 SNF2_N 4.6e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07133 K10875 - mnt:21390362 293.893