Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07128 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCGGGTTCAATACAACCAACAGTTATGGATGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAATTATGAACACAAGAAGTATATGGCTAAAACATTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGCTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATGAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAATTTTATTCTTAGATGA 534 0.3708 MHDHQKKGFQFIWQNIAGSIQPTVMDAKSERRGGCVISHTPGAGKTFLVIAFLVMGYTSFLSLTRENSNYEHKKYMAKTLRESTGILILDEGHNPRSTRSRLRKELMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDENPEKAKHLLETRARNFILR. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07128 177 Pfam SNF2-related domain 59 169 IPR000330 GO:0005524|GO:0140658
Seca3g07128 177 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 54 IPR044567 GO:0080188
Seca3g07128 177 Gene3D - 57 177 IPR038718 -
Seca3g07128 177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 141 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07128 Seca-Chr3 168553215 168554006 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g07128 SNF2_N 8.3e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07128 K10875 - rcu:8272097 187.963