Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07127 ATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAAAAATACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCCTTTAGAGGGAGAGCTTATGGTAACCCTTGGATCATTACATCCATGGTTGATCAAAACAGCAACAAATTCGAATAAGTTTTACTCTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGCTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTCAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCATCCTGGCCAAGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTAA 666 0.3934 MQGLNMLRKITSGFIDVYESGNSDKLPGLQKIQKKMVGSSVFPLEGELMVTLGSLHPWLIKTATNSNKFYSSQELNQLEKFKSDFRLGSKVRFILNLIIRVVKKEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKVIDKFQDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFHPGQEKMVYVYQLLAKG. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07127 221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 93 221 IPR001650 -
Seca3g07127 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 221 IPR027417 -
Seca3g07127 221 Coils Coil 218 221 - -
Seca3g07127 221 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 221 IPR044567 GO:0080188
Seca3g07127 221 Gene3D - 29 221 IPR027417 -
Seca3g07127 221 SMART helicmild6 118 207 IPR001650 -
Seca3g07127 221 Pfam Helicase conserved C-terminal domain 90 203 IPR001650 -
Seca3g07127 221 CDD SF2_C_SNF 82 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07127 Seca-Chr3 168552458 168553174 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07127 133 221 RAD5 or RAD16-like Gene Family AT5G05130 38.889 2.51e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07127 K10875 - jre:108991882 305.064